CX295829

Overview
NameCX295829
Unique NameCX295829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig674 contig Ccv1_Contig674:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 684
            +E+T++MVKPDGVQR L+G+I+SRFE               ++LAEEHY +   +PFF +L+++ITSGPV  M W+G  V+ +AR ++G T+P+ A  GTIRGD A   G N++HGSDSPE+ +REIGLWF   E+  +     +W+
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVGMNIIHGSDSPESAEREIGLWFSAEEVLSFEKTIQRWI 147          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 73/135 (54.07%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 648
            +E +++MVKPDGVQRGL+G++ISR E            +  ++LAEEHY  L  KPFFP LIE+ITSGPV+ M WEG   ++  RK +G+T+P  AEPGTIR D A     NVVHGSD PE+ +REI LWF E E
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFACDVSYNVVHGSDGPESAEREIRLWFGEVE 135          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 684
            +E+T++MVKPDGVQR L+G+I+ RFE            Q    LAE HY +   +PFF +L+++ITSGPV  M WEG  V+A+ARK++G T+PL+A+P TIRGD  +  G+N++HGSDS E+ +REI L+F E E+  +      W+
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVSYEKQANNWI 147          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDKM_HUMAN (Nucleoside diphosphate kinase, mitochondrial OS=Homo sapiens GN=NME4 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 74/138 (53.62%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQW 660
            E T + VKPDGVQR LVGD+I RFE            Q P+ +  EHY+DL  KPF+P LI Y++SGPVV M WEG  VV ++R +IG TD  +A PGTIRGD +V   RNV+H SDS E  +REI LWF+  EL  W
Sbjct:   38 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSW 175          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 77/153 (50.33%), Postives = 97/153 (63.40%), Query Frame = 1
Query:  235 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS-PENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            M   E T++MVKPDGVQRGL+GDI+SRFE            Q   +LA EHY +   KPFF +L E+ITSGPV  M WEG   VA  R ++G TDP ++ PGTIRGD  +  GRNV+HGSD+ P + +REIGL+F + EL  +      WL E
Sbjct:    1 MADTERTFVMVKPDGVQRGLIGDIVSRFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGETDPAESAPGTIRGDFGLDLGRNVIHGSDTEPGSAEREIGLFFDDDELQDYERIDEPWLYE 153          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_ASHGO (Nucleoside diphosphate kinase OS=Ashbya gossypii GN=NDK1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.851e-37
Identity = 72/148 (48.65%), Postives = 96/148 (64.86%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            E T+I +KPDGVQRGL+  I+SRFE               ++L ++HY +   KPFFPK++ Y+TSGP++   WEG  VV   R ++G+T+PL + PGTIRGD A+  GRNV HGSDS E+ +REI LWFK+ EL  W   Q  W+ E
Sbjct:    4 ERTFIAIKPDGVQRGLISKILSRFESRGYKLVGIKLVTPTENLLKQHYAEHVEKPFFPKMLAYMTSGPILATVWEGKDVVKQGRVILGATNPLNSAPGTIRGDFALDMGRNVCHGSDSVESAQREIDLWFKKEELVDWKLNQLSWIYE 151          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 71/149 (47.65%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++MVKPDGVQRGLVG++I R E               +++AE HY +   KPFF  L++YITSGPVV M  EG   +   R L+G+T+P +A PGTIRGD  +  GRNVVH SDSP++ +REI L+F + E+  W  A   W+ E
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_STAES (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ndk PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++M+KPD VQR L+G+IISR E            Q P +LAE+HY +   KPF+ KLI +ITS PV  M  EG   VA +RK+IGST+P +A PGTIRGD  +  GRN++HGSDS E+ +RE+ LWF   E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAPVFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++M+KPD VQR L+G+IISR E            Q P +LAE+HY +   KPF+ KLI +ITS PV  M  EG   VA +RK+IGST+P +A PGTIRGD  +  GRN++HGSDS E+ +RE+ LWF   E+  +   +  WL E
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAPVFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 75/149 (50.34%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E TY+MVKPDGVQRGL+G IIS+FE            Q  +++AE HY +   KPFF  L+++ITSGPVV M  EG  VV +AR+++G+T+PL+A PGTIR    V  GRN++HGSDS E+ +REIG++FK  EL  +  A   W+ E
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
The following BLAST results are available for this feature:
BLAST of CX295829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BREBN6.361e-3846.94Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK_SYMTH8.308e-3854.07Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_OCEIH8.308e-3846.94Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDKM_HUMAN8.308e-3853.62Nucleoside diphosphate kinase, mitochondrial OS=Ho... [more]
NDK_NATPD1.085e-3750.33Nucleoside diphosphate kinase OS=Natronomonas phar... [more]
NDK_ASHGO1.851e-3748.65Nucleoside diphosphate kinase OS=Ashbya gossypii G... [more]
NDK_ARCFU2.417e-3747.65Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_STAES3.157e-3748.32Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_STAEQ3.157e-3748.32Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_DESRM3.157e-3750.34Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]

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Properties
Property NameValue
Genbank descriptionC05076C12SK DroRLeaf1 Citrus clementina cDNA clone C05076C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295829 ID=CX295829; Name=CX295829; organism=Citrus clementina; type=EST; length=710bp
GAGGGTGTAGGTGCGTTAGGTGTGTCATCATCACCAACTCTGGTTGGGAA
GATAAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTGC
GCACCACCAGCCACCTTGCAGCATTCCACCCACAGTCCCATCTTTTCGTA
AAATTCCCACCATGTCCTCAACGCAAAACAGTTGCTCGCAACTCCAACGA
AACCGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGG
AGACTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGC
GACATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGACTGGCTTGAA
GCTCTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATAAGGATCTCA
ATTCCAAACCATTTTTTCCTAAACTGATTGAGTACATTACTTCAGGACCA
GTTGTATGTATGGCATGGGAGGGTGCTGGTGTGGTGGCATCTGCACGTAA
GTTAATAGGGTCAACGGATCCTCTTCAAGCTGAACCAGGCACAATAAGAG
GGGATCTTGCTGTTCAAACTGGAAGGAATGTGGTCCATGGGAGTGACAGC
CCTGAGAATGGCAAGCGTGAAATAGGTCTGTGGTTCAAAGAAGGTGAGTT
GTGTCAGTGGACACCAGCTCAAGCACAGTGGTTAAGGGAGTAATATTCAT
CAACACTTAC
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