CX295844

Overview
NameCX295844
Unique NameCX295844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 73/207 (35.27%), Postives = 106/207 (51.21%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEF++TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVT GL L  +++++  + Y  AQ LG+I    L+K     L        +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV   N
Sbjct:   38 YRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNN 243          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 75/201 (37.31%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEFI+TLLF++  V + I     T        GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  ++++   + Y +AQ LG+I    L+K         L    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   N
Sbjct:   35 YRAIIAEFIATLLFLYVTVATVIGHKNQTGPCG--GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN 232          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 72/200 (36.00%), Postives = 106/200 (53.00%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-------TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 689
            ++A +AEFI+TLLF++  V + I +   ++       G + IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG IV   ++K +        GG A   +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV
Sbjct:   37 YRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGA---NMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAV 232          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 73/201 (36.32%), Postives = 106/201 (52.74%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEF++ +LFVF  +GSA+ FN       TA AA D    V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT  D ++  LG   P+AIG  V    L A  ++G  +NPARSFG +V + N
Sbjct:   11 WRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHN 207          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 70/202 (34.65%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  111 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            S   ++A  AEF +TL +VF G+GS++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARSF PA+ +GN
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN 197          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 71/196 (36.22%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEF++  LFVF  +GSA+ FN             V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVAS +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NPARSFG AV + N
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRN 205          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 73/194 (37.63%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 689
            ++   AE I TLL V  G GS         D       +V IA+  GF +   V    ++SG H+NPAVT GL + G I+IL  IFY I Q +G+I  S +LKV+T     G L +   +                 TF L+  V +   D +K +LG  AP+A+G  +    LAA  ++G SMNPARSFGPAV
Sbjct:   26 WRCLAAELIGTLLLVLIGTGSCTGVQISEGDV------VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTLCMT--SLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV 210          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 69/196 (35.20%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEF++T LFVF  +GSA+ F     +        V +++  G ++        +ISG H+NPAVT GL L  QI+I   + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NPARSFG AV + N
Sbjct:   11 WRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN 205          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 68/200 (34.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSG----LVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEF++ +LFVF  +G+A+ FN    + A    G    +V +++  G ++        ++SG H+NPAVT G  L  QI+IL  + Y IAQ LG++VA+ +L  +T GL   ++  +                  TF LV  V A   D ++  +    P+AIG  V    L A  ++G  MNPARSFG AV + N
Sbjct:   11 WRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA-VTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVLTKN 209          
BLAST of CX295844 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 70/201 (34.83%), Postives = 104/201 (51.74%), Query Frame = 3
Query:  123 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN 701
            ++A +AEF++ +LF+F  +GSA+ F+       T  A  D    V +++  G ++        +ISG H+NPAVT GL L  QI+IL  I Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT    ++  LG   P+AIGF V    L A  ++G  +NPARSFG +V + N
Sbjct:   11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN 208          
The following BLAST results are available for this feature:
BLAST of CX295844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
PIP24_ORYSJ1.136e-2335.27Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP28_ARATH1.484e-2337.31Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ1.938e-2336.00Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
AQP1_CANFA4.318e-2336.32Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
MIP_HUMAN5.639e-2334.65Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQP1_RAT7.365e-2336.22Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP_CICVR9.619e-2337.63Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP1_HUMAN9.619e-2335.20Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQPA_RANES1.256e-2234.00Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP1_SHEEP1.641e-2234.83Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05076E03SK DroRLeaf1 Citrus clementina cDNA clone C05076E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295844 ID=CX295844; Name=CX295844; organism=Citrus clementina; type=EST; length=703bp
ATCTTCTTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTCCCCTAT
TCTCTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCGA
TGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATCT
CAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAAC
AAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCGC
TATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAACA
TCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGGT
GGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTCT
TGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTGG
CAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGTT
GTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCAC
GGCAGCTGACCCCAAGAAGGGATCATTGGGCACCATTGCACCCATTGCCA
TTGGTTTCATTGTCGGTGCCAACATCCTGGCCGCCGGCCCATTCTCCGGT
GGTTCCATGAACCCGGCCCGTTCCTTCGGGCCTGCCGTTGCCAGCGGCAA
CTT
back to top