CX295847

Overview
NameCX295847
Unique NameCX295847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHIB3 (Serine hydroxymethyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 63/168 (37.50%), Postives = 90/168 (53.57%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 504
            I   AVA K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K + G   E+VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F                            + N  + IAK+R  V E  K+FP
Sbjct:  266 IAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVGNF----------------------IADVLDNPNDPANIAKVRAQVAELTKRFP 411
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I   AV  K+A  PE+K YQ+Q++ N     + L   G ++VS GT+NHL+LV+L    + G  +EK+L+A HI ANKNT+P D     V  GIR+GTPA TSRG  E+DF KVA
Sbjct:  267 IAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOUT (Serine hydroxymethyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=glyA PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOSM (Serine hydroxymethyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOSE (Serine hydroxymethyltransferase OS=Escherichia coli (strain SE11) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLU (Serine hydroxymethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLI (Serine hydroxymethyltransferase OS=Escherichia coli (strain K12) GN=glyA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLC (Serine hydroxymethyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ECOL6 (Serine hydroxymethyltransferase OS=Escherichia coli O6 GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383
The following BLAST results are available for this feature:
BLAST of CX295847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SHIB39.530e-2448.70Serine hydroxymethyltransferase OS=Shigella boydii... [more]
GLYA_POLNS9.530e-2437.50Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_EUBR39.530e-2448.70Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_ECOUT9.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOSM9.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOSE9.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOLU9.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOLI9.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOLC9.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOL69.530e-2448.70Serine hydroxymethyltransferase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC05076E06SK DroRLeaf1 Citrus clementina cDNA clone C05076E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295847 ID=CX295847; Name=CX295847; organism=Citrus clementina; type=EST; length=738bp
ACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTA
TAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGA
CTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
CTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGA
AAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTG
GGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCT
CTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTT
CTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAG
GAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCAA
TCCGAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCAGTT
CCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGA
AAAACGCCACTGTACTAGAGCAGCAGAAGCCAGCCTGTATGAGCTTTTAT
TACACAGAGGCGACGAGGGATGAAATGTAACTTATGATGATGAGCCATGT
ATCAACTATCGACCCTGTGATTTGGCGCTTTTATGATACCATAGCAGCAA
ACTTGATTTAGATCACATTAATGTATATAAGTACTCTG
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