CX295849

Overview
NameCX295849
Unique NameCX295849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295849 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 52/162 (32.10%), Postives = 91/162 (56.17%), Query Frame = -1
Query:  194 YVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 679
            +V+++Y MIGF     K     Y M+ + + F    M ++++TP   VA I+ S F + +N+F+GFL+ +  IP WW W+Y+++P +W L    + Q GD+    +I     TK TV  F+ED + F  D + + +I+ I +      ++A+ +  +NFQ+R
Sbjct: 1255 FVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQ--KINAFGETK-TVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413          
BLAST of CX295849 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 52/184 (28.26%), Postives = 86/184 (46.74%), Query Frame = -1
Query:  158 FCLFFYFMWASFIIFTL---YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGL---------VTCQVGDL------ESLVEIPDG---------NNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR*TSLNLKNGRPK 628
            F  F YFM   FI   L   +  M  A++P  ++A +  S  LS+W LFSGF   ++DI  WW W Y++SP  W   GL           C+  +L      ++L+  P+G          + +  +  F  +N D+ K  +  +   +IV+   F  V  +A+K +NF+ + + L +K  + K
Sbjct:  585 FIRFVYFMILLFITDNLSLSFAKMCAAISPTIEIANVTASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGLSINEFTYQAYGCKDSELIPPRTPQNLLPYPEGFGGNQVCQYTSGEQIMDAFGINNPDYFKWIVYAILGAYIVF---FYSVCFFALKYLNFEDKKSKLAVKKLKKK 765          
BLAST of CX295849 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 50/181 (27.62%), Postives = 82/181 (45.30%), Query Frame = -1
Query:  158 FCLFFYFMWASFIIFTL---YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGL---------VTCQVGDL------ESLVEIPDG----NNTKMTVKQFIEDNYDFKKD--FIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR*TSLNLKNGRPK 628
            F  F YFM    +   L   +  M  A++P  ++A ++ S  LS+W LFSGF   ++DI  WW W Y++SP  W   GL           C+  +L      ++L+  P+G       + T  + I D +       F  VV  +   ++  F  V  +A+K  NF+ + + L +K  + K
Sbjct:  594 FIRFVYFMLLLIMTDNLSLSFAKMCAAISPTIEIANVIASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGLSINEFTYQEYGCKTSELIPPRTPQNLLPYPEGFGGNQVCQFTSGEQIMDAFGITNPNYFKWVVFGILSAYIVFFYVVCFFALKYFNFEDKKSKLAVKKLKKK 774          
The following BLAST results are available for this feature:
BLAST of CX295849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
AB33G_ARATH6.855e-2432.10ABC transporter G family member 33 OS=Arabidopsis ... [more]
ABCG5_DICDI2.702e-1228.26ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCG6_DICDI3.901e-1127.62ABC transporter G family member 6 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC05076E08SK DroRLeaf1 Citrus clementina cDNA clone C05076E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295849 ID=CX295849; Name=CX295849; organism=Citrus clementina; type=EST; length=715bp
TTTTTTTTTTTTTTTTTTCTGTCAAAAAAATACTTGCATTCTTATTGAAC
AAAGTACATTACAAACATACATTTATATCACAGTCAATTACTAAACAAGA
AAAAGGAAGTACAAAAGAAAAAAAAAATGTGGTAACCTTTTGTTTCCCAC
ATGCTCACTTAGGTCTACCATTCTTAAGATTTAAGCTGGTTTATCTCCTT
TGGAAGTTGATGGCCTTGATGGCATAGGCAAACACAAACAAGAACACAGC
CATCCAGACAATATGCATGATACTAACGACAGGAATGAAATCTTTCTTGA
AATCATAATTATCTTCGATGAATTGCTTCACTGTCATTTTAGTATTATTA
CCATCAGGAATCTCCACAAGTGACTCTAAGTCACCAACTTGACAAGTCAC
AAGGCCATACAGATTCCAAGCCACCGGAGAAAGCCAGTAGTACCACCTCC
ACCAGACAGGAATATCCGATCTGGCAACGAGGAAACCGGAGAACAAGTTC
CATACACTAAGGAAGAAGGACAAGACAATGGTAGCAACTTGCTGGCCAGG
AGTCAATGCGACAATCATCATTCCGTACAATGTGAAAATGATAAAAGACG
CCCACATGAAGTAGAAGAACAAGCAGAATTTTCCCAGCTCCCACTTGAAT
CCAATCATCGCGTAAAGGATAAGAACATACACACACTTTGAACTGATACA
TATATTATCTCTACG
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