CX295852

Overview
NameCX295852
Unique NameCX295852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 58/133 (43.61%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            FEL P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 55/131 (41.98%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   P+ +NALEPH+S++TLE+H+GKHH  YV  LN  + GTEL + KSLE+++  S         FNNAAQ WNH F+W                  IE+ FGS               FGS W WLV
Sbjct:    2 FELPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEGTELAE-KSLEEIIKTSTG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLV 126          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            +EL   P+   AL P+++K+TLEFH  KHH AYV+N N  +  T+L DG+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    3 YELPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDL-DGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 57/131 (43.51%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 57/131 (43.51%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 56/131 (42.75%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  277 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            L P PY L+AL P +SK+TLEFH+GKHH+ YV NLN  I GTE  +  SLE++V  S         FNNAAQ WNH F+W                  I+  +GS               FGSGW WLV K
Sbjct:    5 LPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEF-ENLSLEEIVKKSSG-----GVFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKK 129          
The following BLAST results are available for this feature:
BLAST of CX295852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_PSEPK1.225e-2243.61Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_PHOLE1.600e-2241.98Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_SYNE72.729e-2241.98Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_SALTY6.079e-2243.51Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI6.079e-2243.51Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_SHIFL1.354e-2141.22Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI1.354e-2141.22Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL61.354e-2141.22Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO571.354e-2141.22Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODF_BORPE2.310e-2142.75Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]

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Properties
Property NameValue
Genbank descriptionC05076E11SK DroRLeaf1 Citrus clementina cDNA clone C05076E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295852 ID=CX295852; Name=CX295852; organism=Citrus clementina; type=EST; length=692bp
ACGCGGTGCCCATTGCACTAACTTCGTAGTCCACAACACAAATCAAGAGT
CAACCCAGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATA
ACCAAAGCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCA
TCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTAC
GCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTG
GTGGCCGAATTTCTGCGAAATTTGAGTTGAAGCCTCCACCTTATCCACTG
AATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGG
AAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAA
CTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTAC
AACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAA
CCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGT
CTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAA
TTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTG
GGCCTGGCTTGTATCAAAGCCAATATAGAGCTGATGTGGCTA
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