CX295852

Overview
NameCX295852
Unique NameCX295852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 55/131 (41.98%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY ++ALEPH+SK+TLEFH GKHH  YV  LN  I GT+  + KSLE++V +S         FNNAAQ WNH F+W                  I   +GS               FGS W WLV
Sbjct:    2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDG-----GVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV 126          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 52/134 (38.81%), Postives = 65/134 (48.51%), Query Frame = 1
Query:  262 SAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            S  F L   PY   + +PH + +T E+H GKHH AYV NLN  +   E    K+LE+++  S ++   +  FNNAAQ WNH FFW                  I  DFGS              QFGSGWAWLV
Sbjct:   11 SYPFVLPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDKEELQKKNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLV 143          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 51/134 (38.06%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  262 SAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            S  F L   PY   + +PH + +T ++H GKHH AYV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWLV
Sbjct:   11 SYPFILPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLV 143          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 57/134 (42.54%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  271 FELKPPPYPLNALEP-HMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +AL    MSK+TLE+H   HH+AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS              QFGSGWAWLV
Sbjct:    3 FELPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTE-WEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 51/133 (38.35%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            F+L   PY +  L PH+S++TL FH+GKHH  YV+ LN  I GT L +  ++E++++     G     FNNAAQ WNH F+W                  IE  FGS               FGSGW WLV K
Sbjct:    3 FKLPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKGTPL-ESCTIEELIL-----GQTGAVFNNAAQIWNHTFYWNSMGPNCGGEPTGPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLK 129          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 49/134 (36.57%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  262 SAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            S  F L   PY   + +PH + +T ++H GKHH  YV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWL+
Sbjct:   11 SYPFILPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHTFFWHSIKPQGGGKPSGKILEQINKDFGSFEEFCEQFKQEAVGQFGSGWAWLI 143          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 52/131 (39.69%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            F+L   PY  NALEPH+SK+TLEFH  KHH  YV+ LN  + GTE  + K+LE+++     +      +NNAAQAWNH F+W                 L    FG                FGSGW WLV
Sbjct:    3 FQLPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTE-QEHKTLEELI----KQKPTQAIYNNAAQAWNHAFYWKCMCGCGVKPSEQLIAKLTAA-FGGLEEFKKKFTEKAVGHFGSGWCWLV 127          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  292 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 660
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  292 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 660
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  292 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 660
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
The following BLAST results are available for this feature:
BLAST of CX295852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_PSEHT8.778e-2141.98Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_RICBR7.431e-2038.81Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_RICFE2.824e-1938.06Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_RHOCA2.824e-1942.54Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_BABBO2.824e-1938.35Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_RICCN1.830e-1836.57Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_ENTHI4.078e-1839.69Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODF_PLAVI5.326e-1840.65Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAMA5.326e-1840.65Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODF_PLAFX5.326e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05076E11SK DroRLeaf1 Citrus clementina cDNA clone C05076E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295852 ID=CX295852; Name=CX295852; organism=Citrus clementina; type=EST; length=692bp
ACGCGGTGCCCATTGCACTAACTTCGTAGTCCACAACACAAATCAAGAGT
CAACCCAGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATA
ACCAAAGCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCA
TCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTAC
GCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTG
GTGGCCGAATTTCTGCGAAATTTGAGTTGAAGCCTCCACCTTATCCACTG
AATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGG
AAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAA
CTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTAC
AACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAA
CCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGT
CTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAA
TTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTG
GGCCTGGCTTGTATCAAAGCCAATATAGAGCTGATGTGGCTA
back to top