CX295852

Overview
NameCX295852
Unique NameCX295852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 46/133 (34.59%), Postives = 59/133 (44.36%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PYP +ALEPH+ K+T+  H  KHH  YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS              +FGSGWAWLV
Sbjct:    3 FELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLV 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 46/133 (34.59%), Postives = 59/133 (44.36%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PYP +ALEPH+ K+T+  H  KHH  YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS              +FGSGWAWLV
Sbjct:    3 FELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLV 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 47/133 (35.34%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH+ + T+E H GKHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 50/138 (36.23%), Postives = 63/138 (45.65%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLV
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLV 133          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 50/138 (36.23%), Postives = 63/138 (45.65%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLV
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLV 133          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 46/133 (34.59%), Postives = 57/133 (42.86%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PYP NALEPH+ + T+  H GKHH  YV  LN  + G      KS+E +V  + +  +       NN     NH  FW                  I  +FGS              +FGSGWAWLV
Sbjct:    3 FELPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLV 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 47/133 (35.34%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH+ K+T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHIDKETMEIHHDKHHNTYVTKLNAVVEGTDL-EAKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGEVVEK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 49/131 (37.40%), Postives = 60/131 (45.80%), Query Frame = 1
Query:  289 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            PY  +ALEPH  K+T+  H  KHH  Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS             T+FGSGWAWLV
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLV 151          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 47/133 (35.34%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYGFDALEPHIDKQTMEIHHDKHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 47/133 (35.34%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-ESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
The following BLAST results are available for this feature:
BLAST of CX295852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM_BACST7.198e-1534.59Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA7.198e-1534.59Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_STAXY1.603e-1435.34Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODF_CAMJJ1.603e-1436.23Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE1.603e-1436.23Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODM_BACHD2.094e-1434.59Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_STAEP2.735e-1435.34Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM1_BACCR2.735e-1437.40Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_STAS13.572e-1435.34Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_STAHJ3.572e-1435.34Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]

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Properties
Property NameValue
Genbank descriptionC05076E11SK DroRLeaf1 Citrus clementina cDNA clone C05076E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295852 ID=CX295852; Name=CX295852; organism=Citrus clementina; type=EST; length=692bp
ACGCGGTGCCCATTGCACTAACTTCGTAGTCCACAACACAAATCAAGAGT
CAACCCAGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATA
ACCAAAGCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCA
TCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTAC
GCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTG
GTGGCCGAATTTCTGCGAAATTTGAGTTGAAGCCTCCACCTTATCCACTG
AATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGG
AAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAA
CTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTAC
AACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAA
CCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGT
CTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAA
TTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTG
GGCCTGGCTTGTATCAAAGCCAATATAGAGCTGATGTGGCTA
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