CX295852

Overview
NameCX295852
Unique NameCX295852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 45/129 (34.88%), Postives = 61/129 (47.29%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 657
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+    KS    ++   + G     FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF--EKSSLFAILTKSSGG----VFNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNW 123          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
The following BLAST results are available for this feature:
BLAST of CX295852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM1_STAAC6.093e-1434.59Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB6.093e-1434.59Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA86.093e-1434.59Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA36.093e-1434.59Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM_SALTY1.773e-1335.25Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODF_HELPJ1.773e-1334.88Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_SHIFL2.315e-1335.25Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_SALTI2.315e-1335.25Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECOLI2.315e-1335.25Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_ECO572.315e-1335.25Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05076E11SK DroRLeaf1 Citrus clementina cDNA clone C05076E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295852 ID=CX295852; Name=CX295852; organism=Citrus clementina; type=EST; length=692bp
ACGCGGTGCCCATTGCACTAACTTCGTAGTCCACAACACAAATCAAGAGT
CAACCCAGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATA
ACCAAAGCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCA
TCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTAC
GCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTG
GTGGCCGAATTTCTGCGAAATTTGAGTTGAAGCCTCCACCTTATCCACTG
AATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGG
AAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAA
CTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTAC
AACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAA
CCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGT
CTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAA
TTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTG
GGCCTGGCTTGTATCAAAGCCAATATAGAGCTGATGTGGCTA
back to top