CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.318e-75
Identity = 136/226 (60.18%), Postives = 176/226 (77.88%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGN-KLKDF 676
            A ++ADMAHISGLV AGV+PSPFE+  VVTTTTHK+LRG R  MIF+R+GV+ ++ K GKE+ Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA TPE+K YQ QV++NC   +  L+E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L V+I+ +      LK+F
Sbjct:  223 AYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEF 448          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.027e-75
Identity = 145/244 (59.43%), Postives = 184/244 (75.41%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVA--THSPLTSIRDAKLR 724
            KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG R  +IF+RKGV+ ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  Q+L N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+ +  KL+DF +     P TS + A LR
Sbjct:  245 KAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTT--KLQDFKSFLLKDPETSHQLADLR 486          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.953e-75
Identity = 131/215 (60.93%), Postives = 174/215 (80.93%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 649
            A +L+DMAH+SGLVAAGV PSPFEY+D+VTTTTHKSLRGPRGAMIF+RKG++++ K+G E+ YD +++IN +VFP  QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L + G+ LVSGGT+ HL+L++L    IDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + + AVKLA+ +KS+
Sbjct:  238 AYLLSDMAHVSGLVAAGVHPSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGIRKVTKKGTEIMYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ 452          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.953e-75
Identity = 138/226 (61.06%), Postives = 176/226 (77.88%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGN-KLKDF 676
            A ++ADMAHISGLVAAGV+PSPFE+  VVTTTTHK+LRG R  MIF+RKGV+ ++ K GKE +Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QVL+NC   +  L E+GY++V+GG++NHL+L++L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+S  +    LK+F
Sbjct:  217 AYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEF 442          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.163e-75
Identity = 137/226 (60.62%), Postives = 177/226 (78.32%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGN-KLKDF 676
            A ++ADMAHISGLVAAGV+PSPFE+  VVTTTTHK+LRG R  MIF+RKGV+ ++ K GKE+ Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+      LK+F
Sbjct:  223 AYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEF 448          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 279.641 bits (714), Expect = 1.150e-74
Identity = 134/214 (62.62%), Postives = 171/214 (79.91%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIK 643
            A ++ADMAHISGLVAAGV+PSPFE+  VV+TTTHK+LRG R  MIF+RKGV+ ++ K GKE  Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+
Sbjct:  223 AYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ 436          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 3.347e-74
Identity = 132/214 (61.68%), Postives = 171/214 (79.91%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIK 643
            A ++ADMAH+SGLVAAGV+PSPFE+  VV+TTTHK+LRG R  MIF+RKGV+ ++ K G+E  Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+
Sbjct:  223 AYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ 436          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 1.272e-73
Identity = 139/226 (61.50%), Postives = 174/226 (76.99%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDF 676
            KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG R  +IF+RKGVK ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++KS+ +  KL+DF
Sbjct:  245 KAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTA--KLQDF 468          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.311e-73
Identity = 144/244 (59.02%), Postives = 180/244 (73.77%), Query Frame = 2
Query:    2 KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVA--THSPLTSIRDAKLR 724
            KA +LADMAHISGLVAA VIPSPF++ADVVTTTTHK+LRG R  +IF+RKGV+ ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++K + +  KL+DF +     P TS   A LR
Sbjct:  245 KAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTA--KLQDFKSFLLKDPETSQHLADLR 486          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.592e-60
Identity = 118/226 (52.21%), Postives = 158/226 (69.91%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVF-YDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFV 679
            A ++ DMAH SGLVAA ++ SPF+Y DVVT+TTHK+LRGPR  +IFFR+G K ++  GKE+  YD E KIN AVFP LQGGPH + I G+AVALK+A + E+K Y  QV  N +     L+  GY+LV+ GT+NHL+L +L+ K + G++ EK  +  +I  NKN V GD +A+ PGGIR+G+ ALTSRG  E DF K+A F D  V ++++I+    G KL DFV
Sbjct:  206 AYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRG-KRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQG-RVGKKLVDFV 429          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_RABIT2.318e-7560.18Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYM_BOVIN3.027e-7559.43Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ASHGO3.953e-7560.93Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_MOUSE3.953e-7561.06Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_PONAB5.163e-7560.62Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_SHEEP1.150e-7462.62Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_BOVIN3.347e-7461.68Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_HUMAN1.272e-7361.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT6.311e-7359.02Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI3.592e-6052.21Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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