CX295854
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.045e-59 Identity = 120/238 (50.42%), Postives = 161/238 (67.65%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDF---VATHSPLTSIR 709 A +L DMAHISG+VA SPF + DVVTTTTHK+LRGPR +IFFRK K + +G + D E +IN AVFP QGGPH +TI G+AVALK+A++P+++ Y +QV N + L + GY LV+ GT+NHLVL +L+ + I GS++EK + HI NKN V GD +A+ PGG+R+G PALTSRG E+DF KV F D VK+++ I+S+ G K+ DF +A + L IR Sbjct: 230 AYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFRK-TKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSK-VGKKMPDFQRAIADNQDLKQIR 465
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 6.142e-52 Identity = 104/200 (52.00%), Postives = 139/200 (69.50%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601 A ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I ++ Y + I++++FPG+QGGP H I AVALK+A T E++ YQ Q+L N ++ L+E G+ LVSGGT+NHL+LV+L+NK I G EK L++++I NKN +P D S MV GIR+GTPA+T+RGF EED +VA Sbjct: 197 AYLMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE--------------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVA 382
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.048e-51 Identity = 104/200 (52.00%), Postives = 134/200 (67.00%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601 A +L DMAH++GLVAAGV PSP + ADV TTTTHK+LRGPRG +I R + E+K+N VFPG QGGP H I G AVA K+A PE+KAYQ+QV++N AQ L+E GY++VSGGT+NHL L++L +K + G + L HI NKNTVP D S V G+R+GTPA+T+RGF EE+ ++A Sbjct: 196 AYLLVDMAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRGGLILARANA------------EVEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA 383
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 3.048e-51 Identity = 104/200 (52.00%), Postives = 136/200 (68.00%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601 A ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I ++ Y + I++++FPG+QGGP H I AVALK+A T E+K YQ Q+L N + L+E G+ LVSGGT+NHL+LV+L+NK I G EK+L+ +I NKN VP D S M+ GIR+GTPA+T+RGF E D +VA Sbjct: 195 AYLMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE--------------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVA 380
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 8.868e-51 Identity = 103/208 (49.52%), Postives = 138/208 (66.35%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625 A ++ DMAHI+GLVAAG+ SP YADVVTTTTHK+LRGPRG +I + + Y KIN+AVFPG+QGGP H I AVA K+A P +K YQ +++SN A LLE G+ELVSGGT+NHL+LV+L++K+I G +++ +AV + NKN VP D + GIR+GTPA+TSRG E+D ++A D A++ Sbjct: 195 AYLMVDMAHIAGLVAAGLHMSPVPYADVVTTTTHKTLRGPRGGLILCKDAER------------YGTKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.158e-50 Identity = 102/208 (49.04%), Postives = 139/208 (66.83%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625 A M+ DMAHI+GLVAAG+ PSP YAD VTTTTHK+LRGPRG IF ++ Y + I+++VFPG+QGGP H I G AV +A ++K Y +Q+++N FA L + G+ +VSGGT+NHL+LV+L NK I G E +L++V I ANKNT+P + S + GIRMGTP++T+RGF EE+ KVAYF + ++ Sbjct: 194 AYMMVDMAHIAGLVAAGLHPSPIPYADFVTTTTHKTLRGPRGGAIFCKE--------------KYAKDIDKSVFPGMQGGPLMHIIAGKAVCFGEALKDDFKDYAQQIVNNAKVFADELTKYGFRIVSGGTDNHLLLVDLTNKNITGKDAEHLLDSVGITANKNTIPFEKKSPFITSGIRMGTPSVTTRGFKEEEMKKVAYFINYVIE 387
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50 Identity = 100/201 (49.75%), Postives = 134/201 (66.67%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 604 A + DMAH +GL+AAGV P+P +AD VTTTTHKSLRGPRG +I + ++E+ IN A+FPG+QGGP H I G AVA K+A +PE+KAYQEQV+ N + A+TL+ G +VSG TE+H++LV+L+ K+I G EKVL HI NKN +P D V G+R+G+PA+T+RGF E + KVA+ Sbjct: 196 AYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAH 382
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.580e-50 Identity = 103/200 (51.50%), Postives = 133/200 (66.50%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601 A + DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I KG E D +K+ VFPG+QGGP H I G AVA K+A P +KAYQ+QV+ N A TL+E GY++VSGGT+NHL+LV++ K + G E L HI NKN+VP D S V G+R+GTPA+T+RG+VE+D +A Sbjct: 195 AYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIV-AKGADE----------DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.580e-50 Identity = 97/207 (46.86%), Postives = 141/207 (68.12%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622 A ++ DMAHI+GLVAAG+ P+P YAD VTTTTHK+LRGPRG ++ ++ +Y+++I++A+FPGLQGGP H I AV+ ++A + E+K YQ+QV+ N S A L +GY+LV+GG++NHL+LV+L+ K + G + E+VL+ VHI NKN VP D V G+R+GTPA+T+RGF E++ +VA D + Sbjct: 192 AYLMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTLRGPRGGVVLCKE--------------EYKKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.580e-50 Identity = 103/207 (49.76%), Postives = 134/207 (64.73%), Query Frame = 2 Query: 5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622 A+++ DMAH +GLVA GV PSPF YADVVTTTTHKSLRGPRGAMI + +Y + I++AVFPG+QGGPH+ T +AVALK+A+T +K Y QV+ N + A L+E G+ LV+GGTENHL+L++L NK I G + K L+A I N N+VP D P GIR+GT A+TSRGF + + + D V Sbjct: 200 ALLMVDMAHFAGLVAGGVHPSPFPYADVVTTTTHKSLRGPRGAMIMCKA--------------EYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392 The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bpback to top |