CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.045e-59
Identity = 120/238 (50.42%), Postives = 161/238 (67.65%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDF---VATHSPLTSIR 709
            A +L DMAHISG+VA     SPF + DVVTTTTHK+LRGPR  +IFFRK  K  + +G  +  D E +IN AVFP  QGGPH +TI G+AVALK+A++P+++ Y +QV  N     + L + GY LV+ GT+NHLVL +L+ + I GS++EK  +  HI  NKN V GD +A+ PGG+R+G PALTSRG  E+DF KV  F D  VK+++ I+S+  G K+ DF   +A +  L  IR
Sbjct:  230 AYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFRK-TKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSK-VGKKMPDFQRAIADNQDLKQIR 465          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.142e-52
Identity = 104/200 (52.00%), Postives = 139/200 (69.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I  ++               Y + I++++FPG+QGGP  H I   AVALK+A T E++ YQ Q+L N    ++ L+E G+ LVSGGT+NHL+LV+L+NK I G   EK L++++I  NKN +P D  S MV  GIR+GTPA+T+RGF EED  +VA
Sbjct:  197 AYLMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE--------------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVA 382          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.048e-51
Identity = 104/200 (52.00%), Postives = 134/200 (67.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A +L DMAH++GLVAAGV PSP + ADV TTTTHK+LRGPRG +I  R               + E+K+N  VFPG QGGP  H I G AVA K+A  PE+KAYQ+QV++N    AQ L+E GY++VSGGT+NHL L++L +K + G   +  L   HI  NKNTVP D  S  V  G+R+GTPA+T+RGF EE+  ++A
Sbjct:  196 AYLLVDMAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRGGLILARANA------------EVEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA 383          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.048e-51
Identity = 104/200 (52.00%), Postives = 136/200 (68.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I  ++               Y + I++++FPG+QGGP  H I   AVALK+A T E+K YQ Q+L N    +  L+E G+ LVSGGT+NHL+LV+L+NK I G   EK+L+  +I  NKN VP D  S M+  GIR+GTPA+T+RGF E D  +VA
Sbjct:  195 AYLMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE--------------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVA 380          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.868e-51
Identity = 103/208 (49.52%), Postives = 138/208 (66.35%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625
            A ++ DMAHI+GLVAAG+  SP  YADVVTTTTHK+LRGPRG +I  +   +            Y  KIN+AVFPG+QGGP  H I   AVA K+A  P +K YQ +++SN    A  LLE G+ELVSGGT+NHL+LV+L++K+I G   +++ +AV +  NKN VP D     +  GIR+GTPA+TSRG  E+D  ++A   D A++
Sbjct:  195 AYLMVDMAHIAGLVAAGLHMSPVPYADVVTTTTHKTLRGPRGGLILCKDAER------------YGTKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.158e-50
Identity = 102/208 (49.04%), Postives = 139/208 (66.83%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625
            A M+ DMAHI+GLVAAG+ PSP  YAD VTTTTHK+LRGPRG  IF ++               Y + I+++VFPG+QGGP  H I G AV   +A   ++K Y +Q+++N   FA  L + G+ +VSGGT+NHL+LV+L NK I G   E +L++V I ANKNT+P +  S  +  GIRMGTP++T+RGF EE+  KVAYF +  ++
Sbjct:  194 AYMMVDMAHIAGLVAAGLHPSPIPYADFVTTTTHKTLRGPRGGAIFCKE--------------KYAKDIDKSVFPGMQGGPLMHIIAGKAVCFGEALKDDFKDYAQQIVNNAKVFADELTKYGFRIVSGGTDNHLLLVDLTNKNITGKDAEHLLDSVGITANKNTIPFEKKSPFITSGIRMGTPSVTTRGFKEEEMKKVAYFINYVIE 387          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 100/201 (49.75%), Postives = 134/201 (66.67%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 604
            A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K+I G   EKVL   HI  NKN +P D     V  G+R+G+PA+T+RGF E +  KVA+
Sbjct:  196 AYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAH 382          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.580e-50
Identity = 103/200 (51.50%), Postives = 133/200 (66.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+E GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  195 AYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIV-AKGADE----------DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.580e-50
Identity = 97/207 (46.86%), Postives = 141/207 (68.12%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622
            A ++ DMAHI+GLVAAG+ P+P  YAD VTTTTHK+LRGPRG ++  ++              +Y+++I++A+FPGLQGGP  H I   AV+ ++A + E+K YQ+QV+ N S  A  L  +GY+LV+GG++NHL+LV+L+ K + G + E+VL+ VHI  NKN VP D     V  G+R+GTPA+T+RGF E++  +VA   D  +
Sbjct:  192 AYLMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTLRGPRGGVVLCKE--------------EYKKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.580e-50
Identity = 103/207 (49.76%), Postives = 134/207 (64.73%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622
            A+++ DMAH +GLVA GV PSPF YADVVTTTTHKSLRGPRGAMI  +               +Y + I++AVFPG+QGGPH+ T   +AVALK+A+T  +K Y  QV+ N +  A  L+E G+ LV+GGTENHL+L++L NK I G +  K L+A  I  N N+VP D      P GIR+GT A+TSRGF + +   +    D  V
Sbjct:  200 ALLMVDMAHFAGLVAGGVHPSPFPYADVVTTTTHKSLRGPRGAMIMCKA--------------EYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI1.045e-5950.42Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYA_CALS86.142e-5252.00Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_ALHEH1.048e-5152.00Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_ANATD3.048e-5152.00Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_PELTS8.868e-5149.52Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_CLOAB1.158e-5049.04Serine hydroxymethyltransferase OS=Clostridium ace... [more]
GLYA_RALPJ1.513e-5049.75Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_STRMK2.580e-5051.50Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_NATTJ2.580e-5046.86Serine hydroxymethyltransferase OS=Natranaerobius ... [more]
GLYA_DESPS2.580e-5049.76Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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