CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_HALOH (Serine hydroxymethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 95/200 (47.50%), Postives = 126/200 (63.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A+ + DMAHI+GLVAAG+ PSP   AD VTTTTHK+LRG RG +I  +               ++ +KI++A+FPGLQGGP  H I   AV  K+A   E+K YQ+Q++SN    A  L   G+ LVSGGT+NHL+LV+L N  I G   E  L+ V I  NKNT+P +  S  V  GIR+GTPA+T+RG  E++   +A
Sbjct:  192 ALFMVDMAHIAGLVAAGLHPSPVPVADFVTTTTHKTLRGTRGGLILCKG--------------EHAKKIDKAIFPGLQGGPLLHIIAAKAVTFKEALQDEFKGYQKQIVSNAKTMAAELKNYGFRLVSGGTDNHLMLVDLTNMDITGKDAETALDKVGITVNKNTIPFEKRSPFVTSGIRIGTPAVTTRGMKEKEMKLIA 377          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_GEOTN (Serine hydroxymethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 92/208 (44.23%), Postives = 134/208 (64.42%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625
            A ++ DMAHI+GLVAAG+ P+P  YA  VTTTTHK+LRGPRG MI  ++               + ++I++++FPG+QGGP  H I   AVAL +A   ++K Y ++++ N  + A  L + G+ LVSGGT+NHL+LV+L+ +++ G   EKVL+ V I  NKNT+P D  S  V  GIR+GT A+T+RGF  E+  ++A      +K
Sbjct:  192 AYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE--------------QFAKQIDKSIFPGIQGGPLMHVIAAKAVALGEALQDDFKVYAKRIIDNAQRLAAALQKEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIASLIGLVLK 385          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_DESAH (Serine hydroxymethyltransferase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 97/208 (46.63%), Postives = 128/208 (61.54%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625
            A+ + DMAHI+GLVAAGV PSP  +AD+VTTTTHK+LRGPRG +I         N+ G         KI+  +FPG+QGGP  H I   AVALK+A +P +  YQ QV++N +  A  L++ G +LVS GT+NHL+L+NL +  I G   E  L A  I  NKN VP D    M+  GIR+GTP +T+RG  E +   VA     A++
Sbjct:  194 ALFMVDMAHIAGLVAAGVHPSPVPHADIVTTTTHKTLRGPRGGLIL------SSNEIGP--------KISSQIFPGIQGGPLMHVIAAKAVALKEALSPSFAQYQRQVVANAATLADALMDRGMKLVSNGTDNHLMLLNLTHNGISGKDAENRLGAAGITVNKNAVPNDPRGPMITSGIRIGTPLVTTRGMGETEMDLVAELITQALE 387          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 95/215 (44.19%), Postives = 128/215 (59.53%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE-----INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVP-GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLA 631
            A+++AD+AH +GLVAAG+  +P  +   VTTTTHK+LRGPRG MI   K  +      IN +         E I+  V PG+QGGP  H I G AVA  +A  PE+KAY +Q+  N +  A   L  GY +VSGGT+NHL+L++L+NK ++G   E +L    I  NKN VP  D S  V  GIR+GTPA+T+RG    +  K+  F D  +  A
Sbjct:  194 ALLMADIAHPAGLVAAGLSANPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPLGLTINTKNGSRVKMMSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAAGYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKVAEAEKIVEFIDRVISAA 408          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CAMHC (Serine hydroxymethyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 92/200 (46.00%), Postives = 124/200 (62.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A + AD+AHI+GLV AG   +PF Y  VV++TTHK+LRGPRG +I   +              ++ +KIN ++FPG+QGGP  H I G AV  K   +PE+K Y +QV +NC     TL++ G++LVSGGT+NHL+LV+   K   G      LE   I  NKNTVPG+  S  V  GIR+G+ ALTSRG  E++F  +A
Sbjct:  191 AFLFADVAHIAGLVVAGEHTNPFPYCHVVSSTTHKTLRGPRGGIIMTNEE-------------EFAKKINSSIFPGMQGGPLVHVIAGKAVGFKHNLSPEWKTYAKQVKANCKILGDTLMKRGFDLVSGGTDNHLILVSFLKKDYSGKDASNALENAGITVNKNTVPGETRSPFVTSGIRVGSAALTSRGMKEKEFEWIA 377          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 102/218 (46.79%), Postives = 130/218 (59.63%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENS 655
            A ++ DMAHI+GLVA G  PSPF +  V TTTTHKSLRGPRG MI      +EI K           KIN AVFPGLQGGP  H I   AVAL +A  P +K Y  QV+ N    A+TL   G ++VSGGT+NHL+LV+L+ K   G R E  L   ++  NKN +P D     V  G+R+G PA T+RGF E +F +V    +  V++   +K+ NS
Sbjct:  202 AWLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSLRGPRGGMILTND--EEIAK-----------KINSAVFPGLQGGPLMHVIAAKAVALGEALQPSFKDYAAQVVKNARTLAETLKANGLDIVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPFVTSGVRLGAPAGTTRGFKEAEFKEVG---ELIVEVLDGLKAANS 403          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_SYNR3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain RCC307) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.050e-43
Identity = 95/200 (47.50%), Postives = 128/200 (64.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A +LADMAHI+GLVAAGV PSP  +  VVTTTTHK+LRGPRG +I                  D+ ++ ++AVFPG QGGP  H +   AVA  +A  P +K Y +QV++N    A+ L E G  +VSGGT+NH+VL++L+   + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+RGF E  F++VA
Sbjct:  195 AYLLADMAHIAGLVAAGVHPSPVPHCHVVTTTTHKTLRGPRGGLILCNDA-------------DFAKQFDKAVFPGTQGGPLEHVVAAKAVAFGEALQPSFKQYSQQVVANAQALAERLQERGIAVVSGGTDNHVVLLDLRGIGMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFDEAAFSEVA 381          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_NITOC (Serine hydroxymethyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.050e-43
Identity = 90/200 (45.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A +LAD+AH++G++AAG+ P+P + ADV T+TTHK+LRGPR  +I        + K   E+    E+K+N  VFPG+QGGP  H +   AVA K+A  P +K YQ QV+ N    A+ +   GY++VSGGT++HL LV+L  K + G   +  L   +I  NKNTVP D  S  V  GIR+G+PA+T+RGF E +  ++A
Sbjct:  196 AYLLADIAHLAGMIAAGIYPNPVQIADVTTSTTHKTLRGPRSGLI--------LAKANPEI----EKKLNSKVFPGIQGGPLMHVVAAKAVAFKEAMEPAFKDYQRQVIRNAQAMAEAIQSRGYKIVSGGTDSHLFLVDLVAKGLTGKAADAALGRANITVNKNTVPNDPQSPFVTSGIRIGSPAMTTRGFKEAEICELA 383          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_LACPL (Serine hydroxymethyltransferase OS=Lactobacillus plantarum GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.050e-43
Identity = 90/201 (44.78%), Postives = 129/201 (64.18%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMG-YELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A+++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG MI  ++               Y +KIN AVFPG QGGP +H I G A+AL +   PE+K Y + ++ N    A+   +     ++SGGT+NHL+ +++    ++G +V+ +L+ V+I  NK  +P + + A    GIR+GTPA+T+RGF E D  KVA
Sbjct:  191 ALLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGMILAKE--------------KYGKKINSAVFPGNQGGPLDHVIAGKAIALGEDLQPEFKVYAQHIIDNAKAMAKVFNDSDLVRVISGGTDNHLMTIDVTKSGLNGRQVQDLLDTVYITVNKEAIPNETLGAFKTSGIRLGTPAITTRGFDEADATKVA 377          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA3_COLP3 (Serine hydroxymethyltransferase 3 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.050e-43
Identity = 100/218 (45.87%), Postives = 130/218 (59.63%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENS 655
            AI++ DMAHI+GLVAAG   +P  +ADVVTTTTHK+LRGPRG +I                  D  +KIN AVFPGLQGGP  H I   AVAL +   P + AY +QVLSN    A TL + G ++V+ GT+ HL+LV+L+ K + G+  E+ LE   I  NKN +P D    MV  GIR+GTPA TSRGF  ++F  +  +    +   V    +NS
Sbjct:  206 AILMVDMAHIAGLVAAGAHQNPLPFADVVTTTTHKTLRGPRGGLILTNNP-------------DVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEPSFGAYIKQVLSNARVLASTLQQRGCDIVTDGTDTHLMLVDLRPKGLKGNTTEESLERAGITCNKNGIPFDSEKPMVTSGIRLGTPAGTSRGFGNDEFELIGQWIGDVLDGLVANPEDNS 410          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HALOH8.040e-4447.50Serine hydroxymethyltransferase OS=Halothermothrix... [more]
GLYA_GEOTN8.040e-4444.23Serine hydroxymethyltransferase OS=Geobacillus the... [more]
GLYA_DESAH8.040e-4446.63Serine hydroxymethyltransferase OS=Desulfobacteriu... [more]
GLYA_CHLTE8.040e-4444.19Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_CAMHC8.040e-4446.00Serine hydroxymethyltransferase OS=Campylobacter h... [more]
GLYA1_RHIME8.040e-4446.79Serine hydroxymethyltransferase 1 OS=Rhizobium mel... [more]
GLYA_SYNR31.050e-4347.50Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_NITOC1.050e-4345.00Serine hydroxymethyltransferase OS=Nitrosococcus o... [more]
GLYA_LACPL1.050e-4344.78Serine hydroxymethyltransferase OS=Lactobacillus p... [more]
GLYA3_COLP31.050e-4345.87Serine hydroxymethyltransferase 3 OS=Colwellia psy... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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