CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_UNCTG (Serine hydroxymethyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 96/216 (44.44%), Postives = 134/216 (62.04%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 649
            A  ++DMAH +GLVAAG+ PSP  YAD+ TTTTHK+LRGPRG +I      +E+ K           KIN A+FPG QGGP  H I   AVA  +A  PE+K YQ+QVL+N  + A+TL E   ++VSGGT++H+ LV+L+   + G   +  LE   I  NKN +P D+    +  GIR+G+PA+T+RG  E +  K+A   +A +K+   I +E
Sbjct:  192 AYHMSDMAHYAGLVAAGIYPSPVGYADITTTTTHKTLRGPRGGLILTNN--EELAK-----------KINSAIFPGEQGGPLMHVIAAKAVAFGEALKPEFKEYQKQVLANAKQLAETLEEGKLKIVSGGTDSHMFLVDLRPLNVKGKNAQDTLEKAGITLNKNGIPYDLEKPTMTSGIRIGSPAVTTRGMKEPEMVKIA---EAIIKVLKNIDNE 391          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ROSCS (Serine hydroxymethyltransferase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 90/231 (38.96%), Postives = 139/231 (60.17%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVK-----EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPG-DVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFV 679
            A + AD+AH +GL+A G++PSP  YA VVT+TTHK+LRGPRG +I   K  +     +  K G+ +     E +++ V PG+QGGP  H I   AV   +   PE++ Y  Q++ N    A  L+  GY ++SGGT+NHL+L++L+NK + G   ++ L+   I  NKN VP  D S ++  GIR+GTPALT+RG  E +  ++A   D  +     I  +++ N++++ V
Sbjct:  195 AFLFADIAHPAGLIAKGLLPSPIPYAHVVTSTTHKTLRGPRGGIIMMGKDFENPFGLKAAKSGRTLMMS--ELLDKMVIPGVQGGPLMHVIAAKAVGFGENLQPEFETYARQIIRNAQTLAGALMARGYHILSGGTDNHLMLIDLRNKGVSGKAAQEALDRAAITTNKNAVPNDDKSPLITSGIRLGTPALTTRGMKEPEMEQIAALIDDVI---THINDDHTINRVREEV 420          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RICTY (Serine hydroxymethyltransferase OS=Rickettsia typhi GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 101/226 (44.69%), Postives = 132/226 (58.41%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEE---KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLK 670
            A ++AD+AHI+GLVA G   SP  YA VVT+TTHK+LRGPRG +I                  DYEE   KIN A+FPGLQGGP  H I   AVA  +   PEYK Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+   I G      L+   I  NKN +P D  S  V  GIR GT A T++GF E+DF  + +   A +   +K   +NS  + K
Sbjct:  196 AYLMADIAHIAGLVATGEHQSPIPYAHVVTSTTHKTLRGPRGGLILS----------------DYEEIGKKINSALFPGLQGGPLMHVIAAKAVAFLENLQPEYKCYIKQVISNAKALAISLQERGYDILTGGTDNHIVLVDLRKDGITGKCAANSLDRAGITCNKNAIPFDTTSPFVTSGIRFGTSACTTKGFKEKDFVLIGHMV-AEILDGLKNNEDNSKTEQK 404          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RICPR (Serine hydroxymethyltransferase OS=Rickettsia prowazekii GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 100/223 (44.84%), Postives = 133/223 (59.64%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLK 670
            A ++AD+AHI+GLVA G   SP  YA VVT+TTHK+LRGPRG +I      +EI K           KIN A+FPGLQGGP  H I   AVA  +   PEYK Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR GTPA T++GF E+DF  + +   A +   +K   +NS  + K
Sbjct:  196 AYLMADIAHIAGLVATGEHQSPIPYAHVVTSTTHKTLRGPRGGLIL--SDDEEIGK-----------KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKNYIKQVISNAKALAISLQERGYDILTGGTDNHIVLVDLRKDGITGKCAANSLDRAGITCNKNAIPFDTTSPFITSGIRFGTPACTTKGFKEKDFVLIGHMV-AEILDGLKHNEDNSKTEQK 404          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_FINM2 (Serine hydroxymethyltransferase OS=Finegoldia magna (strain ATCC 29328) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 92/208 (44.23%), Postives = 126/208 (60.58%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625
            A ++ DMAHI+GLVA G  PSP  YAD VTTTTHK+LRGPRG  I  ++              ++++ ++++VFPG QGGP  H I   AV  K+   PE+K Y  Q+L N     +  L+    LVSGGT+NHL+L++ ++  + G   E VL  V+I  NKNT+P D  +  V  GIR+GTPA+T+RG  E +  KVA F   A+K
Sbjct:  196 AYLMVDMAHIAGLVATGDHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------EHKKLLDKSVFPGFQGGPLEHIIAAKAVCFKEDLQPEFKEYTHQILKNAKAMEKVFLDNDVRLVSGGTDNHLLLIDCRSFGMTGKEAENVLSEVNITTNKNTIPNDPETPFVTSGIRIGTPAITTRGLKEAEATKVAEFMIDALK 389          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CAUSK (Serine hydroxymethyltransferase OS=Caulobacter sp. (strain K31) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 94/207 (45.41%), Postives = 121/207 (58.45%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAM-VPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622
            A ++ DMAH +GLVA GV PSP  +A VVTTTTHK+LRGPRG M+                     +K+N AVFPGLQGGP  H I   AVA  +A  P +KAY + V+ N    A+ L   G  +VSGGT++HL+LV+L+ K + G   E  LE  H+  NKN VP D ++  V  GIR+GTPA T+RGF   +F +V       V
Sbjct:  208 AYLMVDMAHFAGLVAGGVFPSPIPHAHVVTTTTHKTLRGPRGGMVLTNDEA-------------IIKKVNSAVFPGLQGGPLEHVIAAKAVAFGEALQPAFKAYAQAVIDNARALAEALQTQGVNIVSGGTDSHLMLVDLRPKGVTGRDAEHSLERAHMTCNKNGVPFDTASFAVTSGIRLGTPAGTTRGFGAAEFTRVGQLIGEVV 401          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BORDL (Serine hydroxymethyltransferase OS=Borrelia duttonii (strain Ly) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 102/227 (44.93%), Postives = 134/227 (59.03%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE-INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFV 679
            A +L D+AH +GLVA G   SP + A + T+TTHK+LRGPRG +I   K     IN   KE   D    +N  VFPG QGGP  H I G AVA K+A   E+K Y  +V+ N    A+  +  G  +VSGGT+NHL LV+L    I G+  EK+LE+V+I  NKN +P D  +  V  GIR+G PA+TSRG   +D  KVA+F    +  A+K KS +   K+K  V
Sbjct:  187 AYLLCDIAHTAGLVATGFHNSPIDVAHLTTSTTHKTLRGPRGGLILAGKEFNTMINYNNKERTLD--SAVNSCVFPGTQGGPLMHVIAGKAVAFKEALNKEFKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHF----IIRALKTKSTDELRKIKQEV 407          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BEII9 (Serine hydroxymethyltransferase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 94/200 (47.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A    DMAH +GLVA G  PSPF +A VVT+TTHK+LRGPRG ++                  D  +KIN AVFPGLQGGP  H I   AVA  +A  P+++ Y +QV+ N    A  L+E G+ + SGGT+NHL+LV+L+ K++ G   E  L    I  NKN VP D  S  V  GIR+G+PA TSRGF  ++F  VA
Sbjct:  208 AYFFVDMAHFAGLVAGGAHPSPFPHAHVVTSTTHKTLRGPRGGLVLTNDA-------------DIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPDFRLYAQQVVVNAGTLASRLVEKGFAISSGGTDNHLMLVDLRPKQLTGKAAEAALGRASITCNKNGVPFDTASPFVTSGIRLGSPAATSRGFGTKEFQDVA 394          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BACP2 (Serine hydroxymethyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 95/228 (41.67%), Postives = 137/228 (60.09%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK-LAVKIKSENSGNKLKDFVA 682
            A  + DMAHI+GLVA G+ P+P  YAD VTTTTHK+LRGPRG MI  R+              ++ +KI++++FPG+QGGP  H I+  AV+  +    ++K Y + V+ N  + A+TLL    +LVSGGT+NHLVL++L++  I G   E VL+ + I  NKN +P D     V  G+R+GT A+TSRGF +E   +V      A+K    + K E +  ++ D  A
Sbjct:  192 AYFMVDMAHIAGLVAVGLHPNPVPYADFVTTTTHKTLRGPRGGMILCRE--------------EFGKKIDKSIFPGIQGGPLMHVISAKAVSFGEVLNGDFKTYAQNVIDNAKQLAETLLSEDIQLVSGGTDNHLVLIDLRSLGITGKIAENVLDEIGITVNKNAIPYDPEKPFVTSGVRVGTAAVTSRGFDQEAMKEVGSIIALALKHHEDEAKLEEAKKRVSDLTA 405          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA1_RHORT (Serine hydroxymethyltransferase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 92/200 (46.00%), Postives = 123/200 (61.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            AI++ DMAH +GLVA GV PSP  +ADV+T+TTHK+LRGPRG  +                     +KIN AVFPGLQGGP  H I   AVA  +A  P +K Y  +V+ NC   AQTLL+ G  + SGGT+ HL +V+L+   + G+  E+ LE++ I  NKN +P D    MV  GIR+G+ A TSRGF  E++ ++A
Sbjct:  211 AILMVDMAHFAGLVAGGVYPSPVPFADVITSTTHKTLRGPRGGFVLTNDAA-------------IAKKINSAVFPGLQGGPLMHIIAAKAVAFGEALDPSFKIYARRVVENCRVLAQTLLDGGLAITSGGTDCHLAVVDLRPLGVTGTIAEQALESIGITLNKNAIPNDPEKPMVTSGIRVGSAAGTSRGFGPEEYRRIA 397          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_UNCTG3.990e-4344.44Serine hydroxymethyltransferase OS=Uncultured term... [more]
GLYA_ROSCS3.990e-4338.96Serine hydroxymethyltransferase OS=Roseiflexus cas... [more]
GLYA_RICTY3.990e-4344.69Serine hydroxymethyltransferase OS=Rickettsia typh... [more]
GLYA_RICPR3.990e-4344.84Serine hydroxymethyltransferase OS=Rickettsia prow... [more]
GLYA_FINM23.990e-4344.23Serine hydroxymethyltransferase OS=Finegoldia magn... [more]
GLYA_CAUSK3.990e-4345.41Serine hydroxymethyltransferase OS=Caulobacter sp.... [more]
GLYA_BORDL3.990e-4344.93Serine hydroxymethyltransferase OS=Borrelia dutton... [more]
GLYA_BEII93.990e-4347.00Serine hydroxymethyltransferase OS=Beijerinckia in... [more]
GLYA_BACP23.990e-4341.67Serine hydroxymethyltransferase OS=Bacillus pumilu... [more]
GLYA1_RHORT3.990e-4346.00Serine hydroxymethyltransferase 1 OS=Rhodospirillu... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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