CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ORITB (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Boryong) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 98/221 (44.34%), Postives = 132/221 (59.73%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA-YFFDAAVKLA-VKIKSENSG 658
            A +LAD+AHI+GLVA     SP  YA +VT+TTHK+LRGPRG +I      + I+K           KIN AVFPG+QGGP  H I   A+A  +A  P+YK Y  QV+ N    A+ L + GY +++GGT+NH++LV+L+ K I G   E +L+A  I  NK  +P D  S  +  GIR+GTPA T+RGF E +F  V  Y  D    +A +K   +N G
Sbjct:  186 AYLLADIAHIAGLVATEYHSSPIPYAHIVTSTTHKTLRGPRGGLILSND--ESISK-----------KINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENEFITVGKYIADILDNIAIIKSAKKNEG 393          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BORRA (Serine hydroxymethyltransferase OS=Borrelia recurrentis (strain A1) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 102/227 (44.93%), Postives = 134/227 (59.03%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE-INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFV 679
            A +L D+AH +GLVA G   SP + A + T+TTHK+LRGPRG +I   K     IN   KE   D    +N  VFPG QGGP  H I G AVA K+A   E+K Y  +V+ N    A+  +  G  +VSGGT+NHL LV+L    I G+  EK+LE+V+I  NKN +P D  +  V  GIR+G PA+TSRG   +D  KVA+F    +  A+K KS +   K+K  V
Sbjct:  187 AYLLCDIAHTAGLVATGFHNSPIDVAHLTTSTTHKTLRGPRGGLILAGKEFNTMINYNNKERTLDLA--VNSCVFPGTQGGPLMHVIAGKAVAFKEALNKEFKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHF----IIRALKTKSTDELRKIKQEV 407          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 93/227 (40.97%), Postives = 140/227 (61.67%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLKDFVA 682
            A ++ DMAHI+GLVAAG+  +P  YA  VTTTTHK+LRGPRG MI   +   E          ++ +K+++++FPG+QGGP  H I   AVA  +A + E+K Y +Q+++N  +  + L   G ++VSGGT+NHL+L++L++ ++ G   EK L+AV I  NKN +P D     V  GIR+GT A+TSRGF E +  ++       +K    I +E + N ++  VA
Sbjct:  192 AYLMVDMAHIAGLVAAGLHQNPVPYAHFVTTTTHKTLRGPRGGMILCNEETAE----------EFGKKLDKSIFPGIQGGPLMHVIAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGELIALTLK---NIDNEEALNSVRSRVA 405          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA2_ERWCT (Serine hydroxymethyltransferase 2 OS=Erwinia carotovora subsp. atroseptica GN=glyA2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 92/191 (48.17%), Postives = 122/191 (63.87%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGF 574
            AI   DMAH++GLVAAG  P+P   A VVT+TTHK+LRGPRG +I   KG  E          D+ +K+N AVFPG+QGGP  H I   AVA K+A  PE+  YQ QV++N    A+ + + GY++VS GT+NHL+L++L  K   G   +  L   +I  NKN+VP D  S  V  G+R+GTPA+T+RGF
Sbjct:  196 AIFWVDMAHVAGLVAAGEYPNPLPQAHVVTSTTHKTLRGPRGGIIL-AKGQSE----------DFYKKLNAAVFPGIQGGPLMHVIAAKAVAFKEALRPEFTVYQRQVVANARAMARIIQQRGYKIVSDGTDNHLLLIDLSAKPYTGKDADAALSDAYITTNKNSVPNDPRSPFVTSGLRIGTPAVTTRGF 375          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 92/200 (46.00%), Postives = 126/200 (63.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A++L D+AH++GL+ AG  P+PF +  +VTTTTHK+LRGPRG MI      +EI K           KI++AVFPG+QGGP  H I   AV   +   PE+K Y +QV +N    A+ L+  GY LVSGGT+NHL+LV+L +K   G   ++ L    I  NKNTVPG+  S  V  G+R+G+ ALT+RG  E++F  +A
Sbjct:  192 ALLLGDVAHVAGLIVAGEYPNPFPHCHIVTTTTHKTLRGPRGGMILTND--EEIAK-----------KIDKAVFPGMQGGPLMHVIAAKAVGFGENLKPEWKEYAKQVKANAKVLAKVLMARGYTLVSGGTDNHLILVSLLDKEFSGKDADRALGEAGITVNKNTVPGETRSPFVTSGVRIGSAALTARGMREKEFEFIA 378          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_WIGBR (Serine hydroxymethyltransferase OS=Wigglesworthia glossinidia brevipalpis GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 88/200 (44.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A + AD++H++GL+ AG+ P+   YA VVTTTTHK+L GPRG +I        + K+G + FY   +K++ AVFPG QGGP  H I   AVA K+A T ++K YQ Q++ N     +  L+  + +VSGGT+NHL ++NL N  + G    ++LE  +I  NKN++P D ++  +  GIR+GTPA+T RGF E +  KVA
Sbjct:  195 AYLFADISHVAGLIVAGIYPNAIPYAHVVTTTTHKTLSGPRGGLI--------LAKEGDDEFY---KKLDSAVFPGTQGGPLMHIIAAKAVAFKEAMTLKFKKYQHQLVKNSKSMVEIFLKRKFHVVSGGTKNHLFILNLSNIGLKGDLASEILEKANITVNKNSIPNDKLNPKITSGIRIGTPAITKRGFKEIESKKVA 383          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ROSS1 (Serine hydroxymethyltransferase OS=Roseiflexus sp. (strain RS-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 87/212 (41.04%), Postives = 130/212 (61.32%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVK-----EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPG-DVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622
            A + AD+AH +GL+A G++PSP +YA VVT+TTHK+LRGPRG +I   +  +     +  K G+ +     E +++ V PG+QGGP  H I   AV   +   PE++ Y  QV+ N    A  L+  GY ++SGGT+NHL+L++L+NK + G   ++ L+   I  NKN VP  D S ++  GIR+GTPALT+RG  E +  ++A   D  +
Sbjct:  195 AFLFADIAHPAGLIAKGLLPSPIKYAHVVTSTTHKTLRGPRGGIILMGEDFENPFGLKAAKSGRTLMMS--ELLDKMVIPGVQGGPLMHVIAAKAVGFGENLQPEFETYARQVIRNAQTLANALIARGYHVLSGGTDNHLMLIDLRNKAVSGKAAQEALDRAAITTNKNAVPNDDKSPLITSGIRLGTPALTTRGMKEPEMEQIAALIDDVI 404          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RICCN (Serine hydroxymethyltransferase OS=Rickettsia conorii GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 98/223 (43.95%), Postives = 129/223 (57.85%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLK 670
            A  +AD+AHI+GLVA G   SP  YA  VT+TTHK+LRGPRG +I                      KIN A+FPGLQGGP  H I   AVA  +   PEYK+Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +   A +   +K   +NS  + K
Sbjct:  196 AYFMADIAHIAGLVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSNDEA-------------IGHKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGHMV-ADILDGLKNNEDNSALEQK 404          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RICAE (Serine hydroxymethyltransferase OS=Rickettsia africae (strain ESF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 98/223 (43.95%), Postives = 129/223 (57.85%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGNKLK 670
            A  +AD+AHI+GLVA G   SP  YA  VT+TTHK+LRGPRG +I                      KIN A+FPGLQGGP  H I   AVA  +   PEYK+Y +QV+SN    A +L E GY++++GGT+NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +   A +   +K   +NS  + K
Sbjct:  196 AYFMADIAHIAGLVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSNDEA-------------IGHKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGHMV-ADILDGLKNNEDNSALEQK 404          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_PROM0 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 598
            A ++AD+AHI+GLVA+ + P+P  Y DVVTTTTHK+LRGPRG +I  +               ++ +K +++VFPG QGGP  H I   AVA  +A  P++  Y +QV+ N    A TL+  G ++VSGGT+NH+VL++L++  + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+RGF E  FA+V
Sbjct:  195 AFLMADIAHIAGLVASKLHPNPIPYCDVVTTTTHKTLRGPRGGLILCKDA-------------EFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQPDFVNYSQQVIKNAKVLASTLINRGIDIVSGGTDNHIVLLDLRSINMTGKIADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNENAFAEV 380          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ORITB5.211e-4344.34Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_BORRA5.211e-4344.93Serine hydroxymethyltransferase OS=Borrelia recurr... [more]
GLYA_BACSK5.211e-4340.97Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA2_ERWCT5.211e-4348.17Serine hydroxymethyltransferase 2 OS=Erwinia carot... [more]
GLYA_WOLSU6.806e-4346.00Serine hydroxymethyltransferase OS=Wolinella succi... [more]
GLYA_WIGBR6.806e-4344.00Serine hydroxymethyltransferase OS=Wigglesworthia ... [more]
GLYA_ROSS16.806e-4341.04Serine hydroxymethyltransferase OS=Roseiflexus sp.... [more]
GLYA_RICCN6.806e-4343.95Serine hydroxymethyltransferase OS=Rickettsia cono... [more]
GLYA_RICAE6.806e-4343.95Serine hydroxymethyltransferase OS=Rickettsia afri... [more]
GLYA_PROM06.806e-4345.23Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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