CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP7 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 98/220 (44.55%), Postives = 136/220 (61.82%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVK 637
            A +LAD+AHI+GLVA G  PSP  +  VVTTTTHK+LRGPRG +I       E+ K           K ++AVFPG QGGP    I G AVA  +A  PE+K Y  QV++N    A  L++ G+++VS GTENHL+LV+L++  + G + ++++  V+I ANKNT+P D  S  V  G+R+G+PA+T+RG  E +F ++A           D AVK  VK
Sbjct:  197 AYLLADIAHIAGLVATGHHPSPIPHCHVVTTTTHKTLRGPRGGLILTADA--ELGK-----------KFDKAVFPGTQGGPLEQVIAGKAVAFGEALKPEFKTYSGQVIANAQALANGLIKRGFKIVSNGTENHLMLVDLRSIGMTGKQADQLVSEVNITANKNTLPFDPESPFVTSGLRLGSPAMTTRGMKEAEFIEIANIIADRLLNPEDEAVKQDVK 403          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 89/200 (44.50%), Postives = 127/200 (63.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A+++AD+AHI+GLVAAG  PSP  +A V+TTTTHK+LRGPRG +I                  D+ +++N +VFPG QGGP  H I G AVA  +A  PE++ Y  Q+  N    A+ L+  G  LVSGGT+NHL+LV+L++  + G++ ++ L+   I  NKN +P D    M   GIR+GTPA+T+RG  E + A++A
Sbjct:  193 ALLMADIAHIAGLVAAGEHPSPVGHAHVITTTTHKTLRGPRGGLILMGD--------------DFAKQLNSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFRQYAAQIRRNARALAEGLMAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREPEMAQIA 378          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 96/216 (44.44%), Postives = 127/216 (58.80%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVP-GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLA 631
            A ++AD+AH +GLVAAG+  +P  +   VTTTTHK+LRGPRG MI   K      G+    K G  V     E I+  V PG+QGGP  H I G AVA  +A  PE+KAY +Q+  N +  A   L   Y +VSGGT+NHL+L++L+NK ++G   E +L    I  NKN VP  D S  V  GIR+GTPA+T+RG    +  K+  F D  +  A
Sbjct:  194 AFLMADIAHPAGLVAAGLSANPVPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPMGITVNTKNGPRVKM-MSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVISAA 408          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAA (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 89/200 (44.50%), Postives = 127/200 (63.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A+++AD+AHI+GLVAAG  PSP  +A V+TTTTHK+LRGPRG +I                  D+ +++N +VFPG QGGP  H I G AVA  +A  PE++ Y  Q+  N    A+ L+  G  LVSGGT+NHL+LV+L++  + G++ ++ L+   I  NKN +P D    M   GIR+GTPA+T+RG  E + A++A
Sbjct:  193 ALLMADIAHIAGLVAAGEHPSPVGHAHVITTTTHKTLRGPRGGLILMGD--------------DFAKQLNSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFRQYAAQIRRNARALAEGLMAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREPEMAQIA 378          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BACA2 (Serine hydroxymethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 92/208 (44.23%), Postives = 130/208 (62.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 625
            A  + DMAHI+GLVAAG+ P+P  YAD VTTTTHK+LRGPRG MI  R+              ++ +KI++++FPG+QGGP  H I   AV+  +    ++K Y + V+SN    A++L + G +LVSGGT+NHLVLV+L++  + G   E VL+ + I +NKN +P D     V  GIR+GT A+TSRGF  +   +V      A+K
Sbjct:  192 AYFMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTLRGPRGGMILCRE--------------EFGKKIDKSIFPGIQGGPLMHVIAAKAVSFGEVLEDDFKTYAQNVISNAKSLAESLNKEGIQLVSGGTDNHLVLVDLRSLGLTGKVAEHVLDEIGITSNKNAIPYDPEKPFVTSGIRLGTAAVTSRGFDGDALEEVGAIIGLALK 385          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_LISW6 (Serine hydroxymethyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 91/199 (45.73%), Postives = 126/199 (63.32%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKV 598
            A ++ DMAHI+GLVAAG+  +P  YAD  TTTTHK+LRGPRG MI  +               ++E+K+N+++FPG+QGGP  H I   AVA  +A  PE+  Y EQ++ N  K A+TL      +++GG++NHL+L++LK   + G  VEKVL+ V I  NKNT+P +  S  V  GIR+G  A+T+RGF E    KV
Sbjct:  192 AYLMVDMAHIAGLVAAGLHQNPVPYADFTTTTTHKTLRGPRGGMILAKA--------------EWEQKLNKSIFPGIQGGPLMHVIAAKAVAFGEALQPEFTTYCEQIIRNSKKLAETLQAHDVTVLTGGSDNHLLLIDLKPLSLTGKAVEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKV 376          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ELUMP (Serine hydroxymethyltransferase OS=Elusimicrobium minutum (strain Pei191) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 86/204 (42.16%), Postives = 125/204 (61.27%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 613
            A ++ D+AH +GL+AAGV  +P  YAD+VTTTTHK+LRGPRG +I  ++               + + +N +VFPG QGGP  H I   AV   +A  PE+K YQ QV+ N  + +  L ++GY +VSGGT+ H++ V+L +K + G   E+ L+   I  NKNT+P D     +  G+R+GTPA+T+RG  E + A +A F D
Sbjct:  193 AYLICDVAHYAGLIAAGVYSNPVPYADIVTTTTHKTLRGPRGGLILCKE--------------KHAKAVNSSVFPGQQGGPLMHVIAAKAVCFGEALKPEFKEYQTQVVKNAKELSTQLQKLGYRIVSGGTDCHVLCVDLTSKSMTGKAAEEALDKAGITTNKNTIPYDTQKPFITSGVRLGTPAVTTRGMKEAEMAAIASFID 382          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC5 (Serine hydroxymethyltransferase OS=Campylobacter curvus (strain 525.92) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 89/200 (44.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A++ AD+AHI+GLV AG   +PF + DVV++TTHK+LRGPRG +I                  +Y +KIN ++FPG+QGGP  H I   AV  K   +PE+K Y +QV +N  K ++ L+  G++LVSGGT+NHL+L++  N+   G   +  L    I  NKNTVPG+  S  V  GIR+G+PALT+RG  E +F  +A
Sbjct:  190 ALLFADVAHIAGLVVAGEHQNPFPHCDVVSSTTHKTLRGPRGGIIMTNNE-------------EYAKKINASIFPGIQGGPLVHVIAAKAVGFKHNLSPEWKIYAKQVKANAKKLSEILISRGFDLVSGGTDNHLILMSFLNREFSGKDADIALGNAGITVNKNTVPGEKRSPFVTSGIRVGSPALTARGMKEAEFEIIA 376          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_ALCBS (Serine hydroxymethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 92/200 (46.00%), Postives = 124/200 (62.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            AI+L DMAH++GLVAAGV PSP   AD+ TTTTHK+L GPRG +I        + K  +E+    ++KIN AVFPG QGGP  H I   A+  K+A   ++K YQ+QV+ N    A   +E G+++VS GTENHL L++L  + I G   +  L   +I  NKN VP D  S  V  G+R+G+P++T RGF E D   +A
Sbjct:  196 AILLVDMAHVAGLVAAGVYPSPVGIADITTTTTHKTLGGPRGGLI--------MGKASEEI----QKKINSAVFPGGQGGPLEHVIAAKAICFKEAMQDDFKGYQQQVVKNAQAMAGVFIERGFDVVSNGTENHLFLLSLIKQDITGKDADAALGRANITVNKNAVPNDPRSPFVTSGLRIGSPSITRRGFDEADAKALA 383          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 95/201 (47.26%), Postives = 122/201 (60.70%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 604
            A  +AD+AHI+GLVA G   SP  Y   VT+TTHK+LRGPRG +I      +EI K           KIN A+FPGLQGGP  H I   AVA  +   PEYK+Y +QV+SN    A +L E GY++++GGT+NH+VLV+L    I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  196 AYFMADIAHIAGLVATGEHQSPIPYTHAVTSTTHKTLRGPRGGLILSND--EEIGK-----------KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIKQVISNAKALASSLQERGYDILTGGTDNHIVLVDLCKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CYAP78.889e-4344.55Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_CHLSY8.889e-4344.50Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_CHLP88.889e-4344.44Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_CHLAA8.889e-4344.50Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_BACA28.889e-4344.23Serine hydroxymethyltransferase OS=Bacillus amylol... [more]
GLYA_LISW61.161e-4245.73Serine hydroxymethyltransferase OS=Listeria welshi... [more]
GLYA_ELUMP1.161e-4242.16Serine hydroxymethyltransferase OS=Elusimicrobium ... [more]
GLYA_CAMC51.161e-4244.50Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA_ALCBS1.161e-4246.00Serine hydroxymethyltransferase OS=Alcanivorax bor... [more]
GLYA_RICFE1.516e-4247.26Serine hydroxymethyltransferase OS=Rickettsia feli... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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