CX295854

Overview
NameCX295854
Unique NameCX295854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_CAMFF (Serine hydroxymethyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 90/200 (45.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A + AD+AHI+GLV AG   +PF +  VV++TTHK+LRGPRG +I                  ++ +KIN ++FPG+QGGP  H I G AV  K   + E+K Y +QV +N  K  + L+  GY+LVSGGT+NHLVLV+  NK   G   +  L    I  NKNTVPG+  S  +  GIR+G+PALT+RG  E +F  +A
Sbjct:  190 AYLFADVAHIAGLVVAGEHNNPFPHCHVVSSTTHKTLRGPRGGIIMTNDE-------------EFAKKINSSIFPGIQGGPLMHVIAGKAVGFKHNLSDEWKVYAKQVKTNAKKLGEVLINRGYDLVSGGTDNHLVLVSFLNKEFSGKDADIALGNAGITVNKNTVPGETRSPFITSGIRVGSPALTARGMKESEFELIA 376          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_SILPO (Serine hydroxymethyltransferase OS=Silicibacter pomeroyi GN=glyA1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 92/200 (46.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A +  DMAH +GLVAAG  PSPF +A V TTTTHK+LRGPRG MI                  D  +K+N A+FPG+QGGP  H I   AVA  +A  PE+K Y +QV++N    +  L++ G + V+ GT+ H+VLV+L+ K + G+  EK L   HI  NKN VP D     V  GIR+G+PA T+RGF E +F ++A
Sbjct:  203 AYLHVDMAHFAGLVAAGEHPSPFPHAHVATTTTHKTLRGPRGGMILTNDE-------------DIAKKVNSAIFPGIQGGPLMHVIAAKAVAFGEALRPEFKTYIQQVIANAQALSDQLIKGGLDTVTHGTDTHVVLVDLRPKGVKGNATEKALGRAHITCNKNGVPFDPEKPTVTSGIRLGSPAGTTRGFAETEFRQIA 389          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_PHEZH (Serine hydroxymethyltransferase OS=Phenylobacterium zucineum (strain HLK1) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 92/199 (46.23%), Postives = 127/199 (63.82%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 598
            AI++ D+AH +GL+ AG  P+PF +A +VTTTTHK+LRGPRG MI      K++ K           KI+ AVFPGLQGGP  H I   AVA  +A  PE+K Y  QV+ N    A++L  +G+++VS GT++HL+LV+L  K + G+  E  LE   I  NKN++PGD +  M   G+R+GTPA T+RGF   +F +V
Sbjct:  205 AILMCDVAHYAGLIVAGEYPNPFPHAHIVTTTTHKTLRGPRGGMILTND--KKLAK-----------KIDSAVFPGLQGGPLMHVIAAKAVAFGEALKPEFKQYARQVIENARALAESLQSVGFKIVSNGTDSHLMLVDLTPKGVSGADAEIALERAGITTNKNSIPGDPLPPMQTSGLRVGTPAGTTRGFGPGEFRQV 390          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_GRAFK (Serine hydroxymethyltransferase OS=Gramella forsetii (strain KT0803) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 90/211 (42.65%), Postives = 127/211 (60.19%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEK----INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVP-GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622
            AI++ADMAH +GL+A G+I  P  +  +VT+TTHK+LRGPRG +I   K  +  N  G+++     +K    +N  +FPG QGGP  H I   A+A  +A T E+  Y  QV  N  K AQ  +E  Y+++SGGT+NH++L++L+NK + G   E+ L    I  NKN VP  D S  V  GIR+GTPA+T+RG  E D  K+    D  +
Sbjct:  188 AILVADMAHPAGLIAKGLISDPLPHCHIVTSTTHKTLRGPRGGIILMGKDFE--NPFGEKLKNGNLKKMSTMLNSGIFPGNQGGPLEHIIAAKAIAFGEALTDEFLHYTVQVKKNAEKLAQAFVEKDYKVISGGTDNHMMLIDLRNKNVSGKEAEEALSKADITVNKNMVPFDDKSPFVTSGIRIGTPAVTTRGLQENDMNKIVDLIDRVI 396          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 95/211 (45.02%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEI--NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRID--GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 622
            AI++ DMAH +GL+AAG++ +P +YA +VT+TTHK+LRGPRG +I   K        K  K       + ++ AVFPG+QGGP  H I   AVA  +   PEYK YQ QV  N +  AQ L++ G+ +VSGGT+NH +LV+L+ K  D  G   EK L A  I  NKN VP D  SA    GIR+GTPA+T+RG  E+   ++A   +  +
Sbjct:  188 AILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVIMMGKDFPNPWGKKTPKGEIKMMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQPEYKEYQTQVKKNAAVLAQALIDRGFTIVSGGTDNHSMLVDLRTKYPDLTGKVAEKALVAADITVNKNMVPFDSRSAFQTSGIRLGTPAITTRGAKEDLMLEIAEMIETVL 398          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_AQUAE (Serine hydroxymethyltransferase OS=Aquifex aeolicus GN=glyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 89/200 (44.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A+ + DMAH +GL+A GV P+P  YA  VT+TTHK+LRGPR   I   K              +Y + ++++VFPG+QGGP  H I   AVA K+A + E+K Y +QV+ N    A+ L + G+++V+GGT++H+VLV+L+NK I G   EK LE   I  NKN VP D +      GIR+GT ALT+RG  E++  K+A
Sbjct:  192 ALFMVDMAHYAGLIAGGVYPNPVPYAQFVTSTTHKTLRGPRSGFILTTK--------------EYAKAVDKSVFPGIQGGPLMHVIAAKAVAFKEAMSEEFKEYAKQVVENARVLAEELKKYGFKIVTGGTDSHIVLVDLRNKNIIGKDAEKALEKAGITVNKNAVPFDPLPPTKTSGIRIGTAALTTRGMKEDEMRKIA 377          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_NATPD (Serine hydroxymethyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 97/202 (48.02%), Postives = 125/202 (61.88%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRID--GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A  LAD+AHI+GLVAAGV  SP   AD VT +THK++R  RG ++   +              +Y + I+ AVFPG QGGP  H + G AV  K+A  PE++ Y +QV+ N     + L E G+ LVSGGT+NHLVLV+L+    D  G+  E+ LEA  I  NKNTVPG+  SA  P GIR GTPALT+RGF E+   +VA
Sbjct:  194 AYHLADIAHITGLVAAGVHQSPVGVADFVTGSTHKTIRAGRGGIVMCDE--------------EYADDIDAAVFPGAQGGPLMHNVAGKAVGFKEALQPEFEQYAQQVIDNAEALGERLQEHGFSLVSGGTDNHLVLVDLRESHPDTSGTVAEEALEAAGIVLNKNTVPGETRSAFNPSGIRAGTPALTTRGFDEQACERVA 381          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_LACS1 (Serine hydroxymethyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 93/201 (46.27%), Postives = 127/201 (63.18%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE-MGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A ++ DMAHI+GLVA G+ P+P  YAD+ TTTTHK+LRGPRG MI                  +  +KIN  VFPG QGGP  H I G A A  +A TPE+K Y EQ++ N  + A    +     LVS G++NHL+L++++N  ++G   EK+L+ V+I  NKN++P + +S     GIR+GTPA+TSRGF EED  +VA
Sbjct:  191 AKLMVDMAHIAGLVAVGLHPNPVPYADITTTTTHKTLRGPRGGMILTND-------------ENLAKKINSNVFPGTQGGPLEHVIAGKAAAFGEALTPEFKEYGEQIIRNTQEMALCFADNEKARLVSNGSDNHLLLLDVRNFGLNGKEAEKLLDQVNITVNKNSIPFETLSPFKTSGIRIGTPAITSRGFNEEDSYQVA 378          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_KOSOT (Serine hydroxymethyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 94/216 (43.52%), Postives = 131/216 (60.65%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 649
            A ++ DMAH +GLVAAG+ P+P ++A +VT+TTHK+LRGPRG +I              E  Y   + IN+AVFPG+QGGP  H I   AVA  +A   E+K YQ ++++N    A+ L  +G  +VSGGT+ HL LV+L  K + G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  E +   +A   +  VK+   I+ E
Sbjct:  193 AYLIVDMAHFAGLVAAGLYPNPVDHAHIVTSTTHKTLRGPRGGLIL----------TNDEELY---KAINKAVFPGIQGGPLMHVIAAKAVAFGEALKDEFKEYQMRIITNAKALAKELENLGLRIVSGGTDTHLFLVDLNPKNVTGKAAEKALESADITVNKNTIPKETRSPFVTSGIRIGTPAVTTRGMGESEMKVIA---ELIVKVIDNIQDE 392          
BLAST of CX295854 vs. ExPASy Swiss-Prot
Match: GLYA_FRATW (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 87/200 (43.50%), Postives = 121/200 (60.50%), Query Frame = 2
Query:    5 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 601
            A+++AD+AH++GLVAAGV P+PF Y  V TTTTHK+LRGPRG +I                  +  +K   A+FPG+QGGP  H I   AVA K+A  P +  YQ+QVL N     + L + G  ++SGGT NHL+L+++ N    G   E  L   +I  NKN++P D  S  V  G+R+G+PA+T+RGF E++   VA
Sbjct:  196 AVLMADIAHVAGLVAAGVYPNPFPYVYVATTTTHKTLRGPRGGLILCNNNP------------ELAKKFQSAIFPGIQGGPLMHVIAAKAVAFKEALEPSFVDYQKQVLKNAKAMEKVLKQRGINIISGGTSNHLLLLDITNTGFSGKEAEAALGRANITVNKNSIPNDPRSPFVTSGLRIGSPAITTRGFKEKECELVA 383          
The following BLAST results are available for this feature:
BLAST of CX295854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CAMFF1.516e-4245.00Serine hydroxymethyltransferase OS=Campylobacter f... [more]
GLYA_SILPO1.980e-4246.00Serine hydroxymethyltransferase OS=Silicibacter po... [more]
GLYA_PHEZH1.980e-4246.23Serine hydroxymethyltransferase OS=Phenylobacteriu... [more]
GLYA_GRAFK1.980e-4242.65Serine hydroxymethyltransferase OS=Gramella forset... [more]
GLYA_BACV81.980e-4245.02Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_AQUAE1.980e-4244.50Serine hydroxymethyltransferase OS=Aquifex aeolicu... [more]
GLYA_NATPD2.586e-4248.02Serine hydroxymethyltransferase OS=Natronomonas ph... [more]
GLYA_LACS12.586e-4246.27Serine hydroxymethyltransferase OS=Lactobacillus s... [more]
GLYA_KOSOT2.586e-4243.52Serine hydroxymethyltransferase OS=Kosmotoga olear... [more]
GLYA_FRATW2.586e-4243.50Serine hydroxymethyltransferase OS=Francisella tul... [more]

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Properties
Property NameValue
Genbank descriptionC05076F01SK DroRLeaf1 Citrus clementina cDNA clone C05076F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295854 ID=CX295854; Name=CX295854; organism=Citrus clementina; type=EST; length=729bp
AAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTG
CTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACA
ACTCACAAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAA
GGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATG
AAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACAC
AACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCC
AGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTG
CACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAG
AACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAG
AGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTG
TTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACT
CCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGC
ATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAA
ACTCAGGAAACAAGTTGAAAGATTTCGTGGCCACACACAGTCCGCTAACT
TCCATCCGAGATGCGAAACTTCGCATGAT
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