CX295856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19 Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSA---GKDF-LKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD-PTKISKRKRQECIEPLYDR 415 RSL A +VR+QL IMD++ L S +D+ + IRKA+ +G+F A + Y T+ +NQ V +HPS+ L +P+WV+YNE V+TT+ Y+R I P WL +AP+++ +++ P +KR+ I L + Sbjct: 652 RSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSK 790
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19 Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSA---GKDF-LKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD-PTKISKRKRQECIEPLYDR 415 RSL A +VR+QL IMD++ L S +D+ + IRKA+ +G+F A + Y T+ +NQ V +HPS+ L +P+WV+YNE V+TT+ Y+R I P WL +AP+++ +++ P +KR+ I L + Sbjct: 652 RSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSK 790
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18 Identity = 46/114 (40.35%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALF-QRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFK 349 + L +A VR+QL ++ K+++ S+ D + + I SGFF NAAR YRT+ ++ ++IHP+S L+ ++ P WVIYNE++ T++ YMR+V AI+ WL +LAP F++ Sbjct: 573 KGLVRAATVREQLKKLLVKFQVPKKSSEGDPDPVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLLELAPHFYQ 686
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18 Identity = 49/140 (35.00%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKD----FLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDR 415 +R++K A +VR+QL+ IM ++ L + S + ++ IRKA+ +G+F A + Y T+ +NQ V++HPS+ L +P+WVIYNE V+TTR ++R V I WL D+A ++ D + + + +E LY + Sbjct: 582 NRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYY---DLSNFPNCEAKRALEKLYKK 717
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16 Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKD----FLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQ 388 R++K+A VR QL I+ ++KL +VS + + I+K I +GFF A+ + + Y TL + Q V HPS+ L R+P++ IYNE V+T+ Y+R + + WL +LAP +FK K +K Q Sbjct: 579 RAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYENIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGL-TRRPEFCIYNEFVLTSENYIRTITDVKFDWLLELAPSYFKQKSFPKKTKETIQ 707
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15 Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 2 Query: 5 YSRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQ--PDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD 358 +S++LK+A+D+R+QL+ IM K K+ + S D+ +R+ + S +F AA Y L P ++H +S+L+ PD+VIY+ELV+T++EYM V ++DP WLA+ ++ V + Sbjct: 994 HSKTLKRARDIRQQLVEIMSKQKISLESVS-DWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKE 1112
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15 Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFK 349 S+++ +VR QL I K + + S+ D +R+ + F + A P Y T +QPV IHPSS LF +P V+Y EL+ T + YMR++ ID +WL + AP++F+ Sbjct: 586 SKNMTLVAEVRAQLRDICLKMSMPIASSRGDVESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYFR 699
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15 Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSAL--FQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHE 424 +SL +A+D+R QLL I+ K+ V+S+GKD+ I+K I SGF AA+ Y L V +HP+SAL P +V+Y+EL+MT++EY+ V ++DP WL + + + K K ++ L+ ++E Sbjct: 870 KSLVRARDIRDQLLTILKSQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKEYICCVTSVDPFWLMEYGGLLYDI----KRIKNDQEATTTGLFGEHYE 1005
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-14 Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFK 349 S+++ +VR QL I K + ++S+ D +R+ + F N A Y T +QPV IHPSS LF +P V+Y L+ T + YMR++ +D WL + AP +F+ Sbjct: 577 SKNMLLVAEVRAQLREICLKMSMPIMSSRGDMESVRRCMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYFR 690
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13 Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 2 Query: 11 RSLKKAQDVRKQLL--AIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKF 343 R+LK D+RKQL + D ++L S + + + SG+ N A P YRT++ NQ + IHPSS+LF ++ + ++Y+ELV TT+ Y+R V +I WL +AP + Sbjct: 602 RALKTILDIRKQLREHCLKDGWELNS-SPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHY 713 The following BLAST results are available for this feature:
BLAST of CX295856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295856 ID=CX295856; Name=CX295856; organism=Citrus clementina; type=EST; length=657bpback to top |