CX295856

Overview
NameCX295856
Unique NameCX295856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13926 contig Ccv1_Contig13926:1979..2635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSA---GKDF-LKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD-PTKISKRKRQECIEPLYDR 415
            RSL  A +VR+QL  IMD++ L   S     +D+ + IRKA+ +G+F   A  +    Y T+ +NQ V +HPS+ L   +P+WV+YNE V+TT+ Y+R    I P WL  +AP+++ +++ P   +KR+    I  L  +
Sbjct:  652 RSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSK 790          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSA---GKDF-LKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD-PTKISKRKRQECIEPLYDR 415
            RSL  A +VR+QL  IMD++ L   S     +D+ + IRKA+ +G+F   A  +    Y T+ +NQ V +HPS+ L   +P+WV+YNE V+TT+ Y+R    I P WL  +AP+++ +++ P   +KR+    I  L  +
Sbjct:  652 RSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSK 790          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18
Identity = 46/114 (40.35%), Postives = 75/114 (65.79%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALF-QRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFK 349
            + L +A  VR+QL  ++ K+++   S+  D   + + I SGFF NAAR      YRT+ ++  ++IHP+S L+ ++ P WVIYNE++ T++ YMR+V AI+  WL +LAP F++
Sbjct:  573 KGLVRAATVREQLKKLLVKFQVPKKSSEGDPDPVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLLELAPHFYQ 686          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 49/140 (35.00%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKD----FLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDR 415
            +R++K A +VR+QL+ IM ++ L + S   +    ++ IRKA+ +G+F   A  +    Y T+ +NQ V++HPS+ L   +P+WVIYNE V+TTR ++R V  I   WL D+A  ++   D +     + +  +E LY +
Sbjct:  582 NRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYY---DLSNFPNCEAKRALEKLYKK 717          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKD----FLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQ 388
            R++K+A  VR QL  I+ ++KL +VS   +    +  I+K I +GFF   A+ + +  Y TL + Q V  HPS+ L  R+P++ IYNE V+T+  Y+R +  +   WL +LAP +FK     K +K   Q
Sbjct:  579 RAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYENIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGL-TRRPEFCIYNEFVLTSENYIRTITDVKFDWLLELAPSYFKQKSFPKKTKETIQ 707          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 2
Query:    5 YSRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQ--PDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVAD 358
            +S++LK+A+D+R+QL+ IM K K+ + S   D+  +R+ + S +F  AA       Y  L    P ++H +S+L+     PD+VIY+ELV+T++EYM  V ++DP WLA+    ++ V +
Sbjct:  994 HSKTLKRARDIRQQLVEIMSKQKISLESVS-DWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKE 1112          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFK 349
            S+++    +VR QL  I  K  + + S+  D   +R+ +    F + A   P   Y T   +QPV IHPSS LF  +P  V+Y EL+ T + YMR++  ID +WL + AP++F+
Sbjct:  586 SKNMTLVAEVRAQLRDICLKMSMPIASSRGDVESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYFR 699          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSAL--FQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFKVADPTKISKRKRQECIEPLYDRYHE 424
            +SL +A+D+R QLL I+   K+ V+S+GKD+  I+K I SGF   AA+      Y  L     V +HP+SAL      P +V+Y+EL+MT++EY+  V ++DP WL +     + +    K  K  ++     L+  ++E
Sbjct:  870 KSLVRARDIRDQLLTILKSQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKEYICCVTSVDPFWLMEYGGLLYDI----KRIKNDQEATTTGLFGEHYE 1005          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-14
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 2
Query:    8 SRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKFFK 349
            S+++    +VR QL  I  K  + ++S+  D   +R+ +    F N A       Y T   +QPV IHPSS LF  +P  V+Y  L+ T + YMR++  +D  WL + AP +F+
Sbjct:  577 SKNMLLVAEVRAQLREICLKMSMPIMSSRGDMESVRRCMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYFR 690          
BLAST of CX295856 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   11 RSLKKAQDVRKQLL--AIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTREYMREVIAIDPRWLADLAPKF 343
            R+LK   D+RKQL    + D ++L   S   +   +  +  SG+  N A   P   YRT++ NQ + IHPSS+LF ++ + ++Y+ELV TT+ Y+R V +I   WL  +AP +
Sbjct:  602 RALKTILDIRKQLREHCLKDGWELNS-SPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHY 713          
The following BLAST results are available for this feature:
BLAST of CX295856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DHX15_MOUSE9.762e-1937.14Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_HUMAN9.762e-1937.14Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX35_PONAB1.275e-1840.35Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX15_ARATH3.710e-1835.00Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI2.036e-1636.92Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO1.319e-1536.67Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX33_HUMAN1.723e-1535.96Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
PRP16_YEAST2.251e-1535.00Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX33_MOUSE3.250e-1434.21Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]
PRH1_SCHPO8.005e-1337.17Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC05076F03SK DroRLeaf1 Citrus clementina cDNA clone C05076F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295856 ID=CX295856; Name=CX295856; organism=Citrus clementina; type=EST; length=657bp
TTGTTACTCTCGATCTTTGAAGAAGGCACAGGATGTGAGAAAGCAACTTC
TGGCCATCATGGATAAATATAAGTTGGGCGTTGTCAGTGCTGGAAAAGAT
TTCCTGAAGATAAGGAAGGCCATTACTTCTGGATTCTTTTTTAATGCAGC
TAGAAAGGACCCACAGGAGGGCTATCGGACTCTTGTCGAGAACCAGCCGG
TTTATATCCACCCTAGCAGTGCTCTTTTTCAAAGACAGCCTGATTGGGTC
ATTTACAACGAGTTGGTAATGACAACAAGGGAATACATGCGCGAGGTAAT
AGCTATAGATCCAAGGTGGCTTGCAGACTTGGCACCAAAATTCTTCAAGG
TGGCAGATCCCACGAAAATAAGCAAGCGCAAGCGTCAAGAATGCATTGAA
CCGCTATATGATAGATATCATGAACCGAATTCTTGGCGGTTGAGTAAAAG
GCGTGCATGATGCATGATCTCAGCGTTAACCAACGTTATCTTTGTTAGAT
TTTGCATTTTGGTACGTTTGCTTGTGAGTGTGTCAGGTTTATCTTTGTTA
GATTTTGCATTTTGGTACGTTTGCTTGTGAGTGTGTCAGGTTCGATTCTT
CTTTCAACAGTTTGTTAATGTGTTTCTATTGGAGGTTGAACTTTATGTAC
TTTAAAT
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