CX295865

Overview
NameCX295865
Unique NameCX295865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10863 contig Ccv1_Contig10863:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_XENLA (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.537e-37
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPD 571
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       L+ L+    W    KY      A++AFK  V+DPD
Sbjct:    2 PGLNCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLDYTKDEQLDSLFQRTAWVFDEKYKKPGYGAYDAFKNAVSDPD 161          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_CHICK (Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus gallus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.425e-37
Identity = 86/166 (51.81%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 589
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP ++L+SL
Sbjct:    2 PALSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-AILDSL 166          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_METJA (Translation initiation factor 2 subunit alpha OS=Methanocaldococcus jannaschii GN=eif2a PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 64/210 (30.48%), Postives = 106/210 (50.48%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSL--TREVK----EIGPDGQEVTKV-----------IPAVTEEVKDALVKILGEDDPQPLKIELT 727
            +PE    V+  VK++   GA+V LLEY   EGMI  SE             KVG+     VLRVD+ KG+IDLS +RV+E+  +A  + + + +    ++   AE LG  LEE +  +G+ L  ++G  + AF+ +V +   VL+ L  + E K    E+  +  E+T V            P   +++K AL   L  +  + +++++T
Sbjct:    8 FPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKVLRVDERKGHIDLSLKRVTEQQKRAKVQEWKRFQRASKMLERAAEKLGKSLEEAWEEVGYLLEDEFGELYNAFETMVIEGKEVLDDLEISEEWKNVLYEVAKESIELTNVEVEGVIEMKSYAPDGIKQIKKALTTALKANPYEDVEVKIT 217          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_PYRKO (Translation initiation factor 2 subunit alpha OS=Pyrococcus kodakaraensis GN=eif2a PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTR---------------EVKEIGPDGQ-EVTKVIPAVTEEVKDALVK 682
            YPE    V+  VKNI   GA+++L EY   EG +  SE             K G+     V+RVD EKG+IDLS +RV+++  +A  + Y +++   ++++  AE LG D E  +  +  PL  +YG  + AF+    +   VL  L                 E+  +  D + E+T   P   E +K+AL+K
Sbjct:    8 YPEEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFETAWREVWVPLEEEYGEVYAAFEDAAQNGMDVLKGLISDEWIEALKPIIEAYVEIPTVTIDAEFEITVPKPNGIEIIKEALIK 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_THEGJ (Translation initiation factor 2 subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 59/194 (30.41%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTD---------PDSVLNSLTR------EVKEIGPDGQ-EVTKVIPAVTEEVKDALVK 682
            YPE    V+  VKNI   GA++ L EY   EG +  SE             K G+   V V+RVD EKG+IDLS +RV+++  +A  + Y +++   ++++  AE +G D E  +  +  PL  +YG  + AF+    +         PD  L++L        E+  +  D + E+T   P   E +K+AL++
Sbjct:    8 YPEEGEFVVATVKNIHPYGAFLILDEYPGKEGFMHISEVAPTWVKNIRDYVKEGQKVVVKVIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKIGKDFETAWREVWVPLEEEYGEVYAAFEDAAQNGIEVLKGLIPDEWLDALKPIIEAYVEIPTVTIDAEFEITVPKPNGIEIIKEALIR 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULTO (Translation initiation factor 2 subunit alpha OS=Sulfolobus tokodaii GN=eif2a PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15
Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  182 VKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDP 703
            VK I D G+YV+L EY N++  + +SE             K GR   V V+RVDK KG ID+S ++V+E++ +    ++ K + V  I+  V++ +    +E +  + W L  KYG A++A    V + DS+L +       I P  +E+ K I    + VK + +  L   DP
Sbjct:   19 VKQIFDYGSYVTLDEYGNLQAFLPWSEISSRWVKNIRDVIKEGRKIVVKVIRVDKRKGTIDVSLKKVTEDEKRKKMSQWKKIQKVDKILEIVSQKINKTEKEGWEQVAWKLEDKYGDAYDALVKAVKEGDSILKNAGVPEVWIKPLMEEIGKHIE--EKRVKKSEIVTLRSSDP 190          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_THEON (Translation initiation factor 2 subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 58/194 (29.90%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFK------------IIVTDPDSVLNSLTR---EVKEIGPDGQ-EVTKVIPAVTEEVKDALVK 682
            YPE    V+  VK+I   GA++ L EY   EG +  SE             K G+     V+RVD  KG+IDLS +RV+++  +A  + Y +++   ++++  AE LG D E  +  +  PL  +YG  + AF+            II  +    LN + +   EV  +  D + E+T   P   E +K+AL++
Sbjct:    8 YPEEGEFVIATVKSIHPYGAFLKLDEYPGKEGFMHISEVASTWVKNIRDYVKEGQKVVAKVIRVDPNKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFEMAWQEVWVPLEEEYGEVYAAFEDAAQNGIEVLKGIIPEEWLEPLNEIVQNYVEVPTVTIDAEFEITVPKPNGIEIIKEALIR 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_PYRFU (Translation initiation factor 2 subunit alpha OS=Pyrococcus furiosus GN=eif2a PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.076e-14
Identity = 57/194 (29.38%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTD---------PDSVLNSLTR------EVKEIGPDGQ-EVTKVIPAVTEEVKDALVK 682
            YPE    V+  VK + + GA++ L EY   EG +  SE             + G+     V+RVD +KG+IDLS RRV+++  +A  + + +++   ++++  AE LG D EE +  +  PL  ++G  + AF+    +         PD  L  L        EV  +  D + E+T   P   E +K+AL+K
Sbjct:    8 YPEEGELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLREGQKVVAKVIRVDPKKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFEEAWREVWVPLENEWGEVYAAFEDAARNGIEVLKGYVPDEWLPVLKEIIDSYVEVPTVTIDAEFEITVPKPNGIEIIKEALIK 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_PYRHO (Translation initiation factor 2 subunit alpha OS=Pyrococcus horikoshii GN=eif2a PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.022e-13
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTD---------PDSVLNSLTR------EVKEIGPDGQ-EVTKVIPAVTEEVKDALVK 682
            YPE    V+  VK I + GA++ L EY   E  +  SE             K G+     V+RVD  KG+IDLS RRV+++  +A  + + +++   +++R  AE LG D E  +  +  PL  ++G  + AF+    D         PD  L  L        EV  +  D + E+T   P   E +K+AL++
Sbjct:    8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWVPLEEEWGEVYAAFEDAAKDGIEVLKGHVPDEWLPVLKEIVENYVEVPTVTIDAEFEITVPKPNGVEIIKEALIR 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_PYRAB (Translation initiation factor 2 subunit alpha OS=Pyrococcus abyssi GN=eif2a PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  149 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTD---------PDSVLNSLTR------EVKEIGPDGQ-EVTKVIPAVTEEVKDALVK 682
            YPE    V+  VK I + GA++ L EY   E  +  SE             K G+     V+RVD  KG+IDLS RRV+++  +A  + + +++   ++++  AE LG D E  +  +  PL  ++G  + AF+    D         PD  L  L        EV  +  D + E+T   P   E +K+AL++
Sbjct:    8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIR 201          
The following BLAST results are available for this feature:
BLAST of CX295865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF2A_XENLA1.537e-3751.88Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_CHICK3.425e-3751.81Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_METJA7.933e-1830.48Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_PYRKO1.654e-1530.41Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_THEGJ2.821e-1530.41Translation initiation factor 2 subunit alpha OS=T... [more]
IF2A_SULTO6.285e-1531.61Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_THEON6.949e-1429.90Translation initiation factor 2 subunit alpha OS=T... [more]
IF2A_PYRFU9.076e-1429.38Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_PYRHO2.022e-1329.90Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_PYRAB4.504e-1329.38Translation initiation factor 2 subunit alpha OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC05076F12SK DroRLeaf1 Citrus clementina cDNA clone C05076F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295865 ID=CX295865; Name=CX295865; organism=Citrus clementina; type=EST; length=747bp
CGAGGCTCTCCGGTTGTCTTAAACCCTAATTCTTCTTCCCACTCCCTTCG
AATTTTCCCGAGAAAACGCAAAAGCTAAAAAGTTTTCCGAGCAACCAATC
ATGGCAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTA
CCCGGAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACA
TGGGCGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATC
CTTTTCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCAT
TAAAGTCGGCCGCATAGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAA
AAGGTTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAA
GCCTGTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCG
ACACGTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATA
TTGGCTGGCCCTTGTACTGGAAATATGGTCATGCTTTTGAGGCATTCAAA
ATCATTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGT
CAAAGAAATTGGCCCTGATGGACAGGAGGTAACTAAGGTGATTCCTGCTG
TGACGGAGGAAGTGAAAGATGCTTTGGTAAAAATATTAGGAGAAGATGAC
CCACAGCCATTGAAGATCGAGCTGACGTTGAATGAAATGCTCAGTTG
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