CX295865

Overview
NameCX295865
Unique NameCX295865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10863 contig Ccv1_Contig10863:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_PIG (Eukaryotic translation initiation factor 2 subunit 1 (Fragment) OS=Sus scrofa GN=EIF2S1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 313
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGR 67          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_HYPBU (Translation initiation factor 2 subunit alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = 2
Query:  152 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILG 691
            P+V   V+  VK + D GAY++L EY  +E  + +SE             K G+   V V+RV+K K  +D+S +RV++ + +     + +++    I+  VA+ LG  LEE Y  +G  L   YG    AF+ +V   +  L       +E G   + V  ++  +   V+   VKI G
Sbjct:    9 PDVGELVVATVKEVYDYGAYLTLDEYGGLEAYLPWSEVASRWVRSIHDVVKPGQKIVVKVIRVNKRKKQVDVSLKRVTDSERRRKMMEWKRAQKAERILELVAQKLGKSLEEAYEAVGKKLEDYYGELMAAFEEVVIRGEQAL-------REAGVPEEWVQPLLEEIKRHVEVKRVKIAG 181          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_RABIT (Eukaryotic translation initiation factor 2 subunit 1 (Fragment) OS=Oryctolagus cuniculus GN=EIF2S1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2
Query:  116 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE 262
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEG IL SE
Sbjct:    1 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGRILLSE 49          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULIY (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  143 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKIELTLNEMLS 745
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L         I P  +E  K     TEE K  +  ++     +PL ++  + E++S
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKILIDAGVPEIWIKPLLEEAAK----HTEEKKVKMSGLITVKTSEPLGVQ-KIKEVMS 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULIN (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  143 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKIELTLNEMLS 745
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L         I P  +E  K     TEE K  +  ++     +PL ++  + E++S
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKILIDAGVPEIWIKPLLEEAAK----HTEEKKVKMSGLITVKTSEPLGVQ-KIKEVMS 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULIM (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  143 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKIELTLNEMLS 745
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L         I P  +E  K     TEE K  +  ++     +PL ++  + E++S
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKILIDAGVPEIWIKPLLEEAAK----HTEEKKVKMSGLITVKTSEPLGVQ-KIKEVIS 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULIK (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  143 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKIELTLNEMLS 745
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L         I P  +E  K     TEE K  +  ++     +PL ++  + E++S
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKILIDAGVPEIWIKPLLEEAAK----HTEEKKVKMSGLITVKTSEPLGVQ-KIKEVIS 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULIA (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  143 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKIELTLNEMLS 745
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L         I P  +E  K     TEE K  +  ++     +PL ++  + E++S
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKILIDAGVPEIWIKPLLEEAAK----HTEEKKVKMSGLITVKTSEPLGVQ-KIKEVIS 201          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_METKA (Translation initiation factor 2 subunit alpha OS=Methanopyrus kandleri GN=eif2a PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 53/191 (27.75%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  152 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGED-DPQPLKIE 721
            PE    VM  V+ + D GA+V+L EY  ++G I  SE             K G+     V+RV+ ++ Y +LS R+V++   +   + + + +    ++   AE LG DL+E Y   G+ L  +YG  ++A              L R   E GP+      +   V EE  + L ++  E+ +P  +KIE
Sbjct:    9 PEEGEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKEGQKVVAKVIRVNPKRKYANLSLRKVTDHQRKEKLKEWKREQRAEKLLEMAAEELGKDLDEAYEEAGYKLIEEYGSLYDA--------------LERAAAEEGPE----PLLKAGVPEEWAEKLAELAIENIEPGRVKIE 181          
BLAST of CX295865 vs. ExPASy Swiss-Prot
Match: IF2A_SULIL (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 48/201 (23.88%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  143 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKILGEDDPQPLKIELTLNEMLS 745
            +R P     ++  VK + D G+Y++L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L         I P  +E  K     TEE K  +  ++     +PL ++  + E++S
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYITLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKILIDAGVPEIWIKPLLEEAAK----HTEEKKVKMSGLITVKTSEPLGVQ-KIKEVMS 201          
The following BLAST results are available for this feature:
BLAST of CX295865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF2A_PIG4.504e-1353.03Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HYPBU5.883e-1328.89Translation initiation factor 2 subunit alpha OS=H... [more]
IF2A_RABIT4.980e-1265.31Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_SULIY3.228e-1124.38Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIN3.228e-1124.38Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIM3.228e-1124.38Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIK3.228e-1124.38Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIA3.228e-1124.38Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_METKA3.228e-1127.75Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_SULIL4.216e-1123.88Translation initiation factor 2 subunit alpha OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05076F12SK DroRLeaf1 Citrus clementina cDNA clone C05076F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295865 ID=CX295865; Name=CX295865; organism=Citrus clementina; type=EST; length=747bp
CGAGGCTCTCCGGTTGTCTTAAACCCTAATTCTTCTTCCCACTCCCTTCG
AATTTTCCCGAGAAAACGCAAAAGCTAAAAAGTTTTCCGAGCAACCAATC
ATGGCAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTA
CCCGGAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACA
TGGGCGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATC
CTTTTCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCAT
TAAAGTCGGCCGCATAGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAA
AAGGTTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAA
GCCTGTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCG
ACACGTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATA
TTGGCTGGCCCTTGTACTGGAAATATGGTCATGCTTTTGAGGCATTCAAA
ATCATTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGT
CAAAGAAATTGGCCCTGATGGACAGGAGGTAACTAAGGTGATTCCTGCTG
TGACGGAGGAAGTGAAAGATGCTTTGGTAAAAATATTAGGAGAAGATGAC
CCACAGCCATTGAAGATCGAGCTGACGTTGAATGAAATGCTCAGTTG
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