CX295866

Overview
NameCX295866
Unique NameCX295866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14196 contig Ccv1_Contig14196:717..1421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.173e-38
Identity = 91/237 (38.40%), Postives = 133/237 (56.12%), Query Frame = 2
Query:    8 VILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPA----IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            VILR           V+FDHLHATA+Q  PLGRTILGP +NI+++T+E L  YI  +Y + RM+I+++G+             F  L     +A QL    P      F GSE+R  DDD P A  A+A  G SW  PD    +VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G+Y V +    +DDL +  +    +L    + A+V RA  QL++
Sbjct:  142 VILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVKLAEKYFGHLEP---SAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTV-ATRAEVERAKAQLRA 374          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.378e-37
Identity = 82/233 (35.19%), Postives = 129/233 (55.36%), Query Frame = 2
Query:    5 DVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            DVILR           V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y+  HY APRMV+AA+G              F+ +S        + +  P  FTGSE+R  DD +PLA  A+A  G  W +PD++AL V  A++G ++    GG H+ S LA     N++ +S   FN +Y +TGL G + V     +DD+ + +  +  +L    +E++VTR    L++
Sbjct:  166 DVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLSRHYKAPRMVLAAAGGVKHQQLLDLAQDHFSSVS-QVYEEDAVPSITPCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDNVALQVANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSETGLLGAHFVCDAMSIDDMIFFLQGQWMRLCTSATESEVTRGKNILRN 397          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 80/233 (34.33%), Postives = 127/233 (54.51%), Query Frame = 2
Query:    5 DVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            DVILR           V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y++ +Y APRMV+AA+G               + +S        +    P  FTGSE+R  DD +PLA  A+A  G  W +PD++ L V  A++G ++    GG H+ S LA     N++ +S   FN +Y DTGL G + V     +DD+ + +  +  +L    +E++VTR    L++
Sbjct:  166 DVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKAPRMVLAAAGGVEHQQLLDLAQKHLSSVSR-VYEEDAVPGLTPCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDNVTLQVANAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRN 397          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 80/235 (34.04%), Postives = 125/235 (53.19%), Query Frame = 2
Query:    5 DVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSA--DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            DVIL+           V+F++LHATAFQ TPL +++ GP++N++ +++  L  Y+  HY APRMV+AA+G              F+ LS   D      L    P  FTGS++   +D +PLA  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V R    L++
Sbjct:  166 DVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTL---SPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRN 397          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 80/235 (34.04%), Postives = 125/235 (53.19%), Query Frame = 2
Query:    5 DVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQ--LVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            DVILR           V+F++LHATAFQ TPL + + GP++N++ +++  L  Y+ THY APRMV+AA+G                 L   P T ++  +    P  FTGSE+R  DD +P A  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     N++ +S   F+  Y +TGL G + V     +DD+ + +  +  +L    +E++V R    L++
Sbjct:  166 DVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQK---HLGGIPWTYAEDAVPTLTPCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRN 397          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 82/243 (33.74%), Postives = 125/243 (51.44%), Query Frame = 2
Query:    5 DVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEP----AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTK-----LAYRVSEADVTRAPYQLKS 703
            DVI+R           V+FDHLH   ++  PLGRTILGP +NIK+IT+  L++YI  +Y   RMV+A +GA             F  +   P + S +    P     +F   E  I ++ +P    A+A  G SW+ PD    +  QA++G+W++    G +  S LA     N  +A S M+F+T+Y D+GL+G+Y V   D  +     I+ E  K      + ++S+A+V RA  QLK+
Sbjct:  145 DVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHV---PKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVT--DSNEHNVQLIVNEILKEWKRIKSGKISDAEVNRAKAQLKA 382          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 68/220 (30.91%), Postives = 107/220 (48.64%), Query Frame = 2
Query:   53 VIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDD---LAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            V+FD LHA  FQ TPL  ++LG +++I  I+ + L+ +   HY   RMV++A G                  +  P    Q+       FTGSE R  +D++P    A A  G  +   D++AL +    +G W+      +   S L Q++G +    ++  FN NYKDTGLFG+Y VA    L+D   +  ++ +E   LA   +E +V  A  Q ++
Sbjct:  172 VLFDMLHAAGFQGTPLALSVLGTSESIPNISAQQLKEWQEDHYRPVRMVLSAVGGGVSNVSSLADKYFGDLSNEYPRKVPQVDGTR---FTGSEYRYRNDNVPHMYAAFAVEGVGYAHKDALALQIANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDLNDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRT 388          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 73/238 (30.67%), Postives = 111/238 (46.64%), Query Frame = 2
Query:   53 VIFDHLHATAFQYTPLGRTILGPAQNI-KTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELA----------------QRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDC-----LDDLAYAIMYETTKLAYRVSEADVTRAPYQLK 700
            V+ DHLH+ AF+ + LG +ILGP +NI K+ITK  + +++ THYT PRM +  SGA             F  L       S         F G + R  +   PL   AVAF     + PD+I + V++ +LGS++++     +     A                 + G N I  S+ AF   Y D GL G YA+A+P        +++ +  M E  +++  +SE +  RA  QLK
Sbjct:  161 VLMDHLHSAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYTGPRMALVGSGAVDHGQLCDLASKYFGALPTGQPKPSGFTR-----FLGGDKRETNQLNPLTHVAVAFQTPGISHPDAIKIKVLEQLLGSYSRDKGEAAYSCFARAIVMDFYDPKVGQFFRPNKAGHNPI-HSLNAFWAPYSDVGLLGFYAIAEPGKSYGHEWENILHYAMRELIRVSRNISEEEFERAKNQLK 392          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: QCR1_YEAST (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=COR1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 55/216 (25.46%), Postives = 100/216 (46.30%), Query Frame = 2
Query:   56 IFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGV-YAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLK 700
            + +HLH+TAFQ TPL     G  ++++ +    L+++ + H+     V+  +G                 L     T ++ V  + A F GSEVR+ DD +P A  ++A  G     P+     +   + GS+N      +  G +L   +   ++ ++   F+ +YKD+GL+G   A      +DDL +  + +  +L   V++ +V RA   LK
Sbjct:  160 VLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQ----TGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLK 371          
BLAST of CX295866 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 54/232 (23.28%), Postives = 108/232 (46.55%), Query Frame = 2
Query:    8 VILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRAPYQLKS 703
            VIL+           +I++  +++ ++  PLG+ ILG ++ + + TKEH  ++I  HY A  + ++ +G             LF+ L     +        PA + G     I+ D+      + F G  + + + +    + A++     +S   +H+  +L        +A ++ ++N+ Y D+G+F +YA    D L+ L   +  E TK+  +V+E ++ RA  QL+S
Sbjct:  125 VILQEIAHSQDNPDDLIYEKFYSSVYKDQPLGKPILGASKTLSSFTKEHFLSFIDKHYNAGNLYLSVAGNVDHDKIVSSAERLFSSLKQGEKSNFL-----PAKYIGGN-SFINKDLEQTTLILGFEGTPYINLERLYRTQLLAIIFGGGMSSRLFQHIREKLG-------LAYAVGSYNSTYSDSGVFTIYASTAHDKLELLYKELKTEITKMTEKVNEEEMIRAKTQLRS 343          
The following BLAST results are available for this feature:
BLAST of CX295866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MPPB_SCHPO8.173e-3838.40Probable mitochondrial-processing peptidase subuni... [more]
QCR1_RAT2.378e-3735.19Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_MOUSE4.485e-3634.33Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN1.105e-3434.04Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_HUMAN3.214e-3434.04Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST2.018e-2833.74Mitochondrial-processing peptidase subunit beta OS... [more]
UCR1_CAEEL4.652e-2530.91Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_EUGGR1.549e-2030.67Ubiquinol-cytochrome-c reductase complex core prot... [more]
QCR1_YEAST4.662e-1725.46Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
Y338_RICFE1.075e-1323.28Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC05076G01SK DroRLeaf1 Citrus clementina cDNA clone C05076G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295866 ID=CX295866; Name=CX295866; organism=Citrus clementina; type=EST; length=705bp
GGGGGATGTTATTTTGAGAGAAATGGAGGAGGTTGAGGGGCAAACAGAGG
AAGTCATTTTTGATCATTTGCATGCAACTGCATTCCAGTACACTCCTTTG
GGGAGAACTATTCTCGGTCCTGCTCAGAATATCAAGACAATCACAAAAGA
ACATCTGCAGAACTATATTCACACTCACTATACTGCTCCCAGAATGGTGA
TTGCTGCTTCTGGAGCTGTGAAGCATGAAGAAGTTGTTGAGCAAGTGAAG
AAATTGTTCACAAAATTATCAGCGGATCCAACCACTGCTTCTCAATTAGT
TGCAAATGAACCAGCAATTTTCACTGGTTCTGAGGTTAGAATAATTGATG
ACGATATTCCTTTGGCACAATTTGCGGTTGCTTTCGCTGGAGCATCTTGG
ACAGATCCAGATTCAATTGCCCTGATGGTTATGCAGGCAATGTTGGGTTC
ATGGAATAAAAATTCAGTGGGTGGAAAGCACATGGGTTCCGAGCTGGCAC
AGAGAGTTGGCATTAATGAAATTGCAGAAAGCATGATGGCCTTCAACACG
AACTACAAAGACACTGGTCTGTTTGGTGTTTATGCTGTTGCTAAGCCGGA
TTGCTTAGATGATTTGGCCTATGCAATTATGTACGAGACTACCAAGTTAG
CTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCCGTATCAGTTGAAA
TCATC
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