CX295875

Overview
NameCX295875
Unique NameCX295875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295875_ssr604 microsatellite CX295875_ssr604:604..618. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295875 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:    2 PLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRVSYLFWSDI*YIMVLSSKYPNF 325
            PLAER+ + TEQ++ YTG TVGGLLNAT GN  ELII+I AL    I VV+                   FCGG+    K+Q +D+ + +  S +  + V+   +P F
Sbjct:  121 PLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTF 228
The following BLAST results are available for this feature:
BLAST of CX295875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAX6_ARATH4.303e-1339.81Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05076G10SK DroRLeaf1 Citrus clementina cDNA clone C05076G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295875 ID=CX295875; Name=CX295875; organism=Citrus clementina; type=EST; length=727bp
TCCTCTGGCTGAACGTGTCAGCTTCTTGACAGAGCAAATTGCTTTCTACA
CTGGCCCAACAGTGGGGGGATTATTGAACGCGACATGCGGCAATGCCACG
GAGCTCATCATAGCAATTTTTGCCCTATACGAACGTAAAATTGACGTGGT
CAAATATTCTCTTTTGGGTTCCATTCTCTCAAACCTTCTTCTGGTTCTTG
GCACTTCGCTCTTCTGTGGAGGGATTGCCAATCTCAGAAAGGAACAAAAA
TACGATAGAGTAAGTTATTTATTTTGGTCAGATATATAATACATAATGGT
GCTCAGCTCCAAATATCCGAATTTTACCGGACCTAAGTACGACTCTAAAT
CAGTGTTTATCATATGAATTTTTACATTTGTTGTAATTTACAGTCCAATT
AAAATATGCAAAATTAAATAATACGAGAGGTGGGTCAGGTGGGCAAATCT
ACAGTGTTTCCATTGTTTGAGGTGAAGTGTAAGTTGCAAAAAAATATAAT
TTAGCAGGACCCACACCTTATAACTCAAAAGTTAGAAAAATGAGTGCTGA
TTAATTGAGTTAATGTGATGGACGTTTTGACAGAAACAAGCCGATGTCAA
CTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACATGTTACCATTGCTAT
TCAATACGCTGCGGCCTCCTCTGATATTACTGCCAAGGCGACCCTTCAGC
TATCAAGAGCAGCAGCATTGTATGCTG
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