CX295878

Overview
NameCX295878
Unique NameCX295878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_CHICK (Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 117/212 (55.19%), Postives = 140/212 (66.04%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++S+    QL AT  FRKLL     PP ++VI + GVVARFVEFL R++N  LQ EAA  LTNIAS N   T +VI  GAVPIF++LLSS  +DV+E+AVWALGNIA  S   RD VL    L PLL  L+K  + +M RNA   LS  C+GK P P F +V P L  L+ L+  ND DVL  AC ALS LSDG NDKIQAVI+A VC
Sbjct:   87 MIEMIFSNSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFEAAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLLSKQNRITMTRNAVWALSNLCRGKNPPPDFAKVSPCLSVLSWLLFVNDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 298          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.657e-46
Identity = 107/214 (50.00%), Postives = 146/214 (68.22%), Query Frame = 1
Query:    7 EFPGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTN---VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            + P +L  ++SDD   Q++AT  FRK L     PP +KVI +GVV RFVEFL+ E+N  L+ EA+ ALTN+AS ++N   VV++  AVP+FV LLSS   DVRE+AVWALGNIA  SP  RD VL    L PLL  +  + + SMLRN+T TLS  C+GK P+P ++ +   +P L++L+++ D DVL  A  A+S LSDG N+KIQA+I+A +
Sbjct:   79 QLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGI 291          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_BOVIN (Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.295e-46
Identity = 114/212 (53.77%), Postives = 139/212 (65.57%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++S+    QL AT  FRKLL     PP ++VI + GVVARFVEFL R++N  LQ E+A  LTNIAS N   T +VI  GAVPIF++LLSS  +DV+E+AVWALGNIA  S   RD VL    L PLL   +K  + +M RNA   LS  C+GK P P F +V P L  L+ L+  +D DVL  AC ALS LSDG NDKIQAVI+A VC
Sbjct:   87 MIEMIFSNSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 298          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_PONAB (Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.074e-45
Identity = 114/212 (53.77%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++S     QL AT  FRKLL     PP ++VI + GVVARFVEFL R++N  LQ E+A  LTNIAS N   T +VI  GAVPIF++LLSS  +DV+E+AVWALGNIA  S   RD VL    L PLL   +K  + +M RNA   LS  C+GK P P F +V P L  L+ L+  +D DVL  AC ALS LSDG NDKIQAVI+A VC
Sbjct:   87 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 298          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_HUMAN (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.074e-45
Identity = 114/212 (53.77%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++S     QL AT  FRKLL     PP ++VI + GVVARFVEFL R++N  LQ E+A  LTNIAS N   T +VI  GAVPIF++LLSS  +DV+E+AVWALGNIA  S   RD VL    L PLL   +K  + +M RNA   LS  C+GK P P F +V P L  L+ L+  +D DVL  AC ALS LSDG NDKIQAVI+A VC
Sbjct:   87 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 298          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_RAT (Importin subunit alpha-1 OS=Rattus norvegicus GN=Kpna1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 113/208 (54.33%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   31 VWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            ++S+    QL AT  FRKLL     PP ++VI + GVVARFVEFL R++N  LQ E+A  LTNIAS N   T +VI  GAVPIF++LLSS  +DV+E+AVWALGNIA  S   RD VL    L PLL   +K  + +M RNA   LS  C+GK P P F +V P L  L+ L+  +D DVL  AC ALS LSDG NDKIQAVI+A VC
Sbjct:   91 IFSNSPEQQLSATQKFRKLLSKEPNPPIDEVINTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 298          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA5_HUMAN (Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.124e-45
Identity = 112/212 (52.83%), Postives = 142/212 (66.98%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASE---NTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++S+++  QL AT  FRKLL     PP ++VIQ  GVV RFV+FL R +N  LQ EAA ALTNIAS    +T VVI+ GAVPIF+KLL+S  +DV+E+AVWALGNIA  +   RD VL+ + L PLL  L    + +  RNA   LS  C+GK P P F +V P L  L++L+ S+D DVL   C ALS LSDG NDKIQAVI++ VC
Sbjct:   85 MVQMIFSNNADQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNENCTLQFEAAWALTNIASGTFLHTKVVIETGAVPIFIKLLNSEHEDVQEQAVWALGNIAGDNAECRDFVLNCEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSGVC 296          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_MOUSE (Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 113/208 (54.33%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   31 VWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            ++S+    QL AT  FRKLL     PP ++VI + GVVARFVEFL R++N  LQ E+A  LTNIAS N   T  VI  GAVPIF++LLSS  +DV+E+AVWALGNIA  S   RD VL+   L PLL   +K  + +M RNA   LS  C+GK P P F +V P L  L+ L+  +D DVL  AC ALS LSDG NDKIQAVI+A VC
Sbjct:   91 IFSNSPEQQLSATQKFRKLLSKEPNPPIDEVINTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRNVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLNCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 298          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 112/212 (52.83%), Postives = 138/212 (65.09%), Query Frame = 1
Query:    7 EFPGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKP-SMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIE 615
            EFP + A V SDD  LQL A T FRK L     PP ++VI  GVV RFV+FL  E +  LQ EAA ALTNIAS   + T +V+D GAVP F++LLSSP  DVRE+ VWALGNIA  S   RD VL    L PLL  L   A   SMLRNAT TLS  C+GK P P +  +  A+P LA+L++S D +++  AC A+S LSDG N+KI A+++
Sbjct:   78 EFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHH-LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILD 288          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA5_RAT (Importin subunit alpha-6 OS=Rattus norvegicus GN=Kpna5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.025e-44
Identity = 110/212 (51.89%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIASE---NTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++S+++  QL AT  FRKLL     PP ++VIQ  GVV RFV+FL R +N  LQ EAA ALTNIAS    +T VVI+ GAVPIF++LL+S  +DV+E+AVWALGNIA  +   RD VL+ + L PLL  L    + +  RNA   LS  C+GK P P F +V P L  L++L+ S+D DVL   C ALS LSDG NDKIQ VI++ VC
Sbjct:   85 MIQMIFSNNAEQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNENCTLQFEAAWALTNIASGTFLHTKVVIETGAVPIFIRLLTSEHEDVQEQAVWALGNIAGDNAECRDFVLNCEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQVVIDSGVC 296          
The following BLAST results are available for this feature:
BLAST of CX295878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA1_CHICK1.957e-4755.19Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1... [more]
IMA1_SCHPO1.657e-4650.00Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA1_BOVIN6.295e-4653.77Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE... [more]
IMA1_PONAB1.074e-4553.77Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 ... [more]
IMA1_HUMAN1.074e-4553.77Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 ... [more]
IMA1_RAT1.402e-4554.33Importin subunit alpha-1 OS=Rattus norvegicus GN=K... [more]
IMA5_HUMAN3.124e-4552.83Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 ... [more]
IMA1_MOUSE5.329e-4554.33Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 ... [more]
IMA2_SCHPO1.187e-4452.83Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]
IMA5_RAT2.025e-4451.89Importin subunit alpha-6 OS=Rattus norvegicus GN=K... [more]

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Properties
Property NameValue
Genbank descriptionC05076H01SK DroRLeaf1 Citrus clementina cDNA clone C05076H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295878 ID=CX295878; Name=CX295878; organism=Citrus clementina; type=EST; length=706bp
GTTGGTGAGTTTCCTGGGATGCTTGCTGGGGTTTGGTCAGATGACAGTGG
CTTGCAGCTGGAAGCAACTACTTGGTTCCGAAAACTGCTCCTACCACCAA
GTGAGAAAGTCATACAATCTGGCGTTGTCGCGCGCTTTGTTGAGTTTCTT
ACTAGGGAAGACAATCCGCAGCTTCAGTTGGAAGCTGCTCGGGCTCTTAC
AAACATTGCTTCTGAGAATACTAATGTGGTGATCGACGGCGGTGCTGTTC
CAATATTTGTGAAGCTACTTTCTTCTCCAAGTGATGATGTCCGAGAGAAG
GCTGTTTGGGCACTGGGAAATATTGCTCGTAGCTCACCTAGAGACCGTGA
TCTTGTGCTCAGTGAAAAAGCTTTGATTCCGTTGCTGGCACAGTTAAATA
AGCATGCTAAGCCTTCAATGCTAAGAAATGCCACAAAGACATTGTCTCGT
TTTTGCCAGGGCAAGCCAGAGCCACCATTTGATCAGGTGAGGCCAGCTCT
TCCTGCGCTTGCACAACTTGTTCATTCAAATGACAACGATGTCTTGAGAT
ATGCCTGCGAGGCACTATCCTGTCTATCTGATGGTACGAATGACAAAATT
CAAGCTGTGATCGAGGCAGATGTCTGTCCACGACTTGTTAAGCTCCTTCT
TCATCCATTACCCTTCCCCTTCGGGCTCACTCCTCCCCTGTGGACTGTCA
GATATA
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