CX295878

Overview
NameCX295878
Unique NameCX295878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA5_DANRE (Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.714e-43
Identity = 111/208 (53.37%), Postives = 138/208 (66.35%), Query Frame = 1
Query:   31 VWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            ++S+D   QL AT  FRKLL     PP ++VI + GVV RFVEFL R DN  LQ EAA ALTNIAS   ++T VVI+ GAVPIF++LL+S  +DV+E+AVWALGNIA  +   RD VL+   L  L   L K  + +  RNA   LS  C+GK P P F +V P L  L++L+ S+D DVL  AC ALS LSDG NDKIQ VI++ VC
Sbjct:   89 IFSEDPDQQLIATQKFRKLLSKEPNPPIDEVIGTPGVVNRFVEFLRRSDNCTLQFEAAWALTNIASGTFQHTKVVIETGAVPIFIELLNSEYEDVQEQAVWALGNIAGDNAECRDYVLNCGILPSLQQLLAKSNRLTTTRNAVWALSNLCRGKNPPPDFAKVSPCLSVLSRLLFSSDPDVLADACWALSYLSDGPNDKIQTVIDSGVC 296          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_YEAST (Importin subunit alpha OS=Saccharomyces cerevisiae GN=SRP1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 104/214 (48.60%), Postives = 136/214 (63.55%), Query Frame = 1
Query:    7 EFPGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            E P M   + SDD   QL AT  FR++L     PP + VIQ+GVV R VEF+       LQLEAA ALTNIAS     T VV+D  AVP+F++LL + S +V+E+A+WALGN+A  S   RD VL   A+ P+L   N + KPS++R AT TLS  C+G KP+P +  V  ALP LA+L++S D + L  AC A+S LSDG  + IQAVI+  +
Sbjct:   88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI 300          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_XENLA (Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 92/210 (43.81%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            ++ G+ S D   +L  T   RK+L     PP   +I++G++ + VEFL+R DN  LQ EAA ALTNIAS   + T  V+DGGA+P F+ L+SSP   + E+AVWALGNIA   P  RD +++   + PLLA +N       LRN T  LS  C+ K P PP   V   LP L QL+H +D D+L   C A+S L+DG+ND+I  V++  +
Sbjct:   78 IVQGMNSGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIPKLVEFLSRHDNSTLQFEAAWALTNIASGTSDQTKSVVDGGAIPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALINCNVIPPLLALVNPQTPLGYLRNITWMLSNLCRNKNPYPPMSAVLQILPVLTQLMHHDDKDILSDTCWAMSYLTDGSNDRIDVVVKTGI 287          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA2_MOUSE (Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 97/217 (44.70%), Postives = 134/217 (61.75%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            ++ G+ S++   QL+AT   RKLL     PP + +I++G++ +FV FL + D   +Q E+A ALTNIAS   E T  V+DGGA+P F+ LL+SP   + E+AVWALGNIA      RDLV+   A+ PLLA L   A P +       LRN T TLS  C+ K P PP D V   LP L +L+H ND +VL  +C A+S L+DG N++I+ V++  V
Sbjct:   81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 294          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA2_HUMAN (Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.831e-38
Identity = 98/217 (45.16%), Postives = 131/217 (60.37%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            ++ G+ S +   QL+AT   RKLL     PP + +I++G++ +FV FL R D   +Q E+A ALTNIAS   E T  V+DGGA+P F+ LL+SP   + E+AVWALGNIA      RDLV+   A+ PLLA L   A P M       LRN T TLS  C+ K P PP D V   LP L +L+H +D +VL   C A+S L+DG N++I  V++  V
Sbjct:   81 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALL---AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGV 294          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA2_XENLA (Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 90/207 (43.48%), Postives = 125/207 (60.39%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIE 615
            ++ G+ S D+  +L +T   RK+L     PP   +I++G++ + VEFL+  +N  LQ EAA ALTNIAS   + T  V+DGGA+P F+ L+SSP   + E+AVWALGNIA   P  RD ++S   + PLL  +N       LRN T TLS  C+ K P PP   V   LP L QL+   D D+L   C A+S L+DG+ND+I  V++
Sbjct:   78 IVQGMNSGDNENELRSTQAARKMLSKERNPPLNDIIEAGLIPKLVEFLSYHNNSTLQFEAAWALTNIASGTSDQTKSVVDGGAIPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALISCNVIPPLLTLVNPQTPLGYLRNITWTLSNLCRNKNPYPPMSAVLQILPVLTQLMLHEDKDILSDTCWAMSYLTDGSNDRIDVVVK 284          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA4_MOUSE (Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = 1
Query:   37 SDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            SD+ G+QL A    RKLL     PP + +I+SG++   V  L R+DNP LQ EAA ALTNIAS   E T  V+   AVP+F++LL SP  +V E+AVWALGNI    P+ RD V+S   + PLL+ ++     + LRN T  +   C+ K P PP + ++  LPAL  L+H  D ++L     ALS L+D  N++IQ VI++ +
Sbjct:   82 SDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGI 285          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA4_HUMAN (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = 1
Query:   37 SDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            SD+ G+QL A    RKLL     PP + +I+SG++   V  L R+DNP LQ EAA ALTNIAS   E T  V+   AVP+F++LL SP  +V E+AVWALGNI    P+ RD V+S   + PLL+ ++     + LRN T  +   C+ K P PP + ++  LPAL  L+H  D ++L     ALS L+D  N++IQ VI++ +
Sbjct:   82 SDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGI 285          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 91/210 (43.33%), Postives = 126/210 (60.00%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            +L    SD+  +QL A    RKLL     PP + +I+SG++   V+ L R+DNP LQ EAA ALTNIAS     T  V+   AVP+F++LL SP  +V E+AVWALGNI    P+ RD V+S   + PLL+ +N     + LRN T  +   C+ K P PP + V+  LPAL  L++  D ++L     ALS L+DG N++IQ VI++ V
Sbjct:   76 ILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGV 285          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.529e-35
Identity = 90/210 (42.86%), Postives = 126/210 (60.00%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            +L    SD+  +QL A    RKLL     PP + +I+SG++   V+ L R+DNP LQ EAA ALTNIAS     T  V+   AVP+F++LL SP  +V E+AVWALGNI    P+ RD V+S   + PLL+ ++     + LRN T  +   C+ K P PP + V+  LPAL  L++  D ++L     ALS L+DG N++IQ VI++ V
Sbjct:   76 ILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGV 285          
The following BLAST results are available for this feature:
BLAST of CX295878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA5_DANRE1.714e-4353.37Importin subunit alpha-6 OS=Danio rerio GN=kpna5 P... [more]
IMA1_YEAST3.233e-4248.60Importin subunit alpha OS=Saccharomyces cerevisiae... [more]
IMA1_XENLA5.162e-4043.81Importin subunit alpha-1 OS=Xenopus laevis GN=kpna... [more]
IMA2_MOUSE3.346e-3944.70Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 ... [more]
IMA2_HUMAN4.831e-3845.16Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 ... [more]
IMA2_XENLA6.310e-3843.48Importin subunit alpha-2 OS=Xenopus laevis GN=kpna... [more]
IMA4_MOUSE4.522e-3643.63Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 ... [more]
IMA4_HUMAN4.522e-3643.63Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 ... [more]
IMA3_MOUSE1.718e-3543.33Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]
IMA3_HUMAN6.529e-3542.86Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]

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Properties
Property NameValue
Genbank descriptionC05076H01SK DroRLeaf1 Citrus clementina cDNA clone C05076H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295878 ID=CX295878; Name=CX295878; organism=Citrus clementina; type=EST; length=706bp
GTTGGTGAGTTTCCTGGGATGCTTGCTGGGGTTTGGTCAGATGACAGTGG
CTTGCAGCTGGAAGCAACTACTTGGTTCCGAAAACTGCTCCTACCACCAA
GTGAGAAAGTCATACAATCTGGCGTTGTCGCGCGCTTTGTTGAGTTTCTT
ACTAGGGAAGACAATCCGCAGCTTCAGTTGGAAGCTGCTCGGGCTCTTAC
AAACATTGCTTCTGAGAATACTAATGTGGTGATCGACGGCGGTGCTGTTC
CAATATTTGTGAAGCTACTTTCTTCTCCAAGTGATGATGTCCGAGAGAAG
GCTGTTTGGGCACTGGGAAATATTGCTCGTAGCTCACCTAGAGACCGTGA
TCTTGTGCTCAGTGAAAAAGCTTTGATTCCGTTGCTGGCACAGTTAAATA
AGCATGCTAAGCCTTCAATGCTAAGAAATGCCACAAAGACATTGTCTCGT
TTTTGCCAGGGCAAGCCAGAGCCACCATTTGATCAGGTGAGGCCAGCTCT
TCCTGCGCTTGCACAACTTGTTCATTCAAATGACAACGATGTCTTGAGAT
ATGCCTGCGAGGCACTATCCTGTCTATCTGATGGTACGAATGACAAAATT
CAAGCTGTGATCGAGGCAGATGTCTGTCCACGACTTGTTAAGCTCCTTCT
TCATCCATTACCCTTCCCCTTCGGGCTCACTCCTCCCCTGTGGACTGTCA
GATATA
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