CX295878

Overview
NameCX295878
Unique NameCX295878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA8_HUMAN (Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.240e-34
Identity = 94/210 (44.76%), Postives = 125/210 (59.52%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            ++ GV S D  L  +AT   RK+L     PP + VI++G++ R VEFL     P LQ EAA ALTNIAS   E T  V++GGA+   ++LLSS +  V E+AVWALGNIA   P  RD V++  A+  LLA ++     + LRN T TLS  C+ K P P    V+  LPAL  L+   D++VL  AC ALS L+DG+N +I  V+   V
Sbjct:   75 IIKGVNSSDPVLCFQATQTARKMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQTRAVVEGGAIQPLIELLSSSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALISPTLPITFLRNITWTLSNLCRNKNPYPCDTAVKQILPALLHLLQHQDSEVLSDACWALSYLTDGSNKRIGQVVNTGV 284          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA_DROME (Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.608e-33
Identity = 90/209 (43.06%), Postives = 120/209 (57.42%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEAD 621
            ++A + S+D   Q       RK+L     PP + +I  G+V   + FL   +N  LQ EAA ALTNIAS   + T  VI+  AVP FV LL S S ++ E+AVWALGNIA      RD+V+    +  +L  +N     S LRN    +S  C+ K P PPFDQV+  LP L+QL+ S D  VL  AC ALS ++D  N KIQAV+++D
Sbjct:   74 IVAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADACWALSYVTDDDNTKIQAVVDSD 282          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1A_DICDI (Probable importin subunit alpha-A OS=Dictyostelium discoideum GN=DDB_G0273149 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 86/231 (37.23%), Postives = 133/231 (57.58%), Query Frame = 1
Query:    1 VGEFPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASEN---TNVVIDGGAVPIFVKLL-SSPSDDVREKAVWALGNIARSSPRDRDLVL---SEKALIPLL----------AQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND--NDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            +   PG++  + S+D      +   FRKLL     PP ++VI+ G++ +  + L + +NP++Q E+A ALTNIAS N   T  V++ G+VPIF++LL +  +D+V+E+  WALGNIA  +   R+ +L   +  ALIPLL             N   K  +++N   T+S  C+GKP+P F  V   LPA+ +L+   +  +++    C ALS L DG N KIQAVI++ V
Sbjct:   82 IKNLPGLVTALNSNDQAYVYSSLVQFRKLLSIHAYPPIDQVIECGIIPKLNQLL-QCNNPKVQFESAWALTNIASGNNRQTQTVMESGSVPIFIQLLCAETTDEVKEQCAWALGNIAGDTVDSRNYLLKYGAMNALIPLLHYGEDNGATTTSANSERKIGLIQNVVWTISNLCRGKPQPDFSVVSQCLPAINELIRIENLPSEIYGDLCWALSYLCDGPNTKIQAVIDSGV 311          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 91/209 (43.54%), Postives = 117/209 (55.98%), Query Frame = 1
Query:   22 LAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            +A   S D   QL A    RK+L     PP + +I SG++   V+ L+  D P LQ EAA ALTNIAS   E T  V++ GAVP+F++LLS  + +V E++VWALGNI    P  RD  L    L PLL  +N       LRN T  +   C+ K P P    VR  LPAL+ L+H  D ++L     ALS L+DG N+ IQ VIEA V
Sbjct:   71 VAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQV 278          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA2_CAEEL (Importin subunit alpha-2 OS=Caenorhabditis elegans GN=ima-2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 61/184 (33.15%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   94 PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL---SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            PP ++VI  G++   V+ L+ E N ++Q EAA ALTNI S   E T   ++ G     + L    S  + E+A+WA+ NIA  S + RD V+     +AL+ L+ ++++    S +R      S  C+ K P  P + +R     L +LV   D  V + AC A+S L+DG +++I+   E+ V
Sbjct:  123 PPIDEVIHCGLLQALVQALSVE-NERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQ-LGDSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQIELARESGV 304          
The following BLAST results are available for this feature:
BLAST of CX295878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA8_HUMAN3.240e-3444.76Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 ... [more]
IMA_DROME1.608e-3343.06Importin subunit alpha OS=Drosophila melanogaster ... [more]
IMA1A_DICDI2.568e-3137.23Probable importin subunit alpha-A OS=Dictyostelium... [more]
IMA3_CAEEL9.757e-3143.54Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA2_CAEEL1.158e-1533.15Importin subunit alpha-2 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC05076H01SK DroRLeaf1 Citrus clementina cDNA clone C05076H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295878 ID=CX295878; Name=CX295878; organism=Citrus clementina; type=EST; length=706bp
GTTGGTGAGTTTCCTGGGATGCTTGCTGGGGTTTGGTCAGATGACAGTGG
CTTGCAGCTGGAAGCAACTACTTGGTTCCGAAAACTGCTCCTACCACCAA
GTGAGAAAGTCATACAATCTGGCGTTGTCGCGCGCTTTGTTGAGTTTCTT
ACTAGGGAAGACAATCCGCAGCTTCAGTTGGAAGCTGCTCGGGCTCTTAC
AAACATTGCTTCTGAGAATACTAATGTGGTGATCGACGGCGGTGCTGTTC
CAATATTTGTGAAGCTACTTTCTTCTCCAAGTGATGATGTCCGAGAGAAG
GCTGTTTGGGCACTGGGAAATATTGCTCGTAGCTCACCTAGAGACCGTGA
TCTTGTGCTCAGTGAAAAAGCTTTGATTCCGTTGCTGGCACAGTTAAATA
AGCATGCTAAGCCTTCAATGCTAAGAAATGCCACAAAGACATTGTCTCGT
TTTTGCCAGGGCAAGCCAGAGCCACCATTTGATCAGGTGAGGCCAGCTCT
TCCTGCGCTTGCACAACTTGTTCATTCAAATGACAACGATGTCTTGAGAT
ATGCCTGCGAGGCACTATCCTGTCTATCTGATGGTACGAATGACAAAATT
CAAGCTGTGATCGAGGCAGATGTCTGTCCACGACTTGTTAAGCTCCTTCT
TCATCCATTACCCTTCCCCTTCGGGCTCACTCCTCCCCTGTGGACTGTCA
GATATA
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