CX295882

Overview
NameCX295882
Unique NameCX295882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11354 contig Ccv1_Contig11354:139..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 6.849e-75
Identity = 136/245 (55.51%), Postives = 155/245 (63.27%), Query Frame = 2
Query:    2 RQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXX----RDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAADTQ 724
            RQAG A+CPGGLCCS +G+CG T  YC  GCQSQC G                               +  F+ LLK RNDA C   GFYTY+AFI+AA  F  FG TG+   RKREIAAFL QTSHETTGGWP AP GPYAWGYC+ +E  N   YC PS  + C  GK+Y GRGPIQ+S+NYNYG  G  + + LL+ P+ V  DP ISFKTA WFWM  QSPKPSCH VITG W  SAAD +
Sbjct:   27 RQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEI-NCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLE 270          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.889e-74
Identity = 131/243 (53.91%), Postives = 161/243 (66.26%), Query Frame = 2
Query:    2 RQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQC--SGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSP-KPSCHDVITGQWKASAADT 721
            RQAGGA CP  LCCS++G+CG T  YC  GCQSQC  S                             D FE++L HR+DAAC  +GFY Y AF+AAA +F AF  TG+ DTRKRE+AAFLAQTSH T+GG       PY+WGYC+K+ +G   D+C P+ +WPCAPGK Y  RGP+QI+YNYNYG AG+AI  DLL NP+ VA DPT++FKTA W WMT +SP +PS H V+TGQW  + AD+
Sbjct:   37 RQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGG-------PYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADS 272          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.889e-74
Identity = 131/243 (53.91%), Postives = 161/243 (66.26%), Query Frame = 2
Query:    2 RQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQC--SGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSP-KPSCHDVITGQWKASAADT 721
            RQAGGA CP  LCCS++G+CG T  YC  GCQSQC  S                             D FE++L HR+DAAC  +GFY Y AF+AAA +F AF  TG+ DTRKRE+AAFLAQTSH T+GG       PY+WGYC+K+ +G   D+C P+ +WPCAPGK Y  RGP+QI+YNYNYG AG+AI  DLL NP+ VA DPT++FKTA W WMT +SP +PS H V+TGQW  + AD+
Sbjct:   37 RQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGG-------PYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADS 272          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.139e-60
Identity = 103/174 (59.20%), Postives = 126/174 (72.41%), Query Frame = 2
Query:  200 LFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPS-QQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            L+  L  H++DAAC  +GFYTY +F+ AA  F  F  TG  D RKRE+AAFLAQ SHETTGGW TAPDGPYAWG C+K+E      YC  + +QWPC PGK Y GRGPIQIS+N+NYGPAG+A+  D LRNP+ VAN   I+F+TA WFWMT +  KPSCH V+ G+++   AD
Sbjct:   57 LYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPAD 230          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 111/243 (45.68%), Postives = 136/243 (55.97%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQP--SQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSP-KPSCHDVITGQWKASAADTQ 724
            QAG A CP  LCCS  G+CG T AYC  GC SQC                               +FEQ+L +RN+ +C GKGFYTYDA+  A   +  FG TG+ DTRKRE+AAF AQTS ET+G      D P+ WGYC   E     DYC P     +PC     Y+GRGP+Q+ +NYNYG  G  +  +LL  P+ VA DP +SF+ A WFWM   S   PSCH+VITG+W  S AD +
Sbjct:   29 QAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNCFFT-----------------------ESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCV--ADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIE 246          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57
Identity = 113/173 (65.32%), Postives = 122/173 (70.52%), Query Frame = 2
Query:  200 LFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            LFE++L HR        GFYTYDAFIAAA SF AF TTG+TD RKRE+AAFLAQTSHETTGGWPTAPDGPY        E G+  DY               FGRGPIQISYNYNYG AGKAI VDLLRNPD V +D T+ FKTA WFWMT QSPKPS HDVITG+W  S+ D
Sbjct:    9 LFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSDY---------------FGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTD 150          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.435e-56
Identity = 102/175 (58.29%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  194 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            R +FE +L HR D  CQG  FYTYDAFI AA  F  FGTTGN +TR+RE+AAF  QTSHETTGGW TAPDGP+AWGYC +  +  P D               Y+GRGPIQ+++ YNY  AG A+ +DL+ NPD V++DP ++F+TA WFWMT QSPKPSCHDVIT QW  S  D
Sbjct:   33 RAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYC-RVNEITPSD-------------PPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDD 192          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.706e-55
Identity = 110/242 (45.45%), Postives = 130/242 (53.72%), Query Frame = 2
Query:    2 RQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRD-LFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAADTQ 724
            +QAG A+CPGGLCCS +G+CG T  YC +GCQSQC G                            + +F+ +LK+RND  C   GFYTY+AFI+AA  F  FG TG+   RKREIAAFL QTSHET G WP A    Y WGYC                                    NYNYG  G  +N+ LL+ P+ V  DP I+FKTA WFWMT QSPKPSCH VIT  W  SAAD++
Sbjct:   26 QQAGDALCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYC----------------------------------HMNYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSE 233          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 110/175 (62.86%), Postives = 123/175 (70.29%), Query Frame = 2
Query:  197 DLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAADT 721
            DLF+Q+LK+RNDA C    FYTYDAFIAAANSF  FGTTG+   RK+EIAAF  QTSHETTGG   +PDGPYA GYCF +E GN               G  Y+GRGPIQ++   NY  AGKAI  DL+ NPD VA D T+SFKTA WFWMT Q  KPSCHDVITG+W  SAADT
Sbjct:   33 DLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLRE-GNQ-------------MGNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADT 192          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 107/174 (61.49%), Postives = 122/174 (70.11%), Query Frame = 2
Query:  197 DLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            DLF ++LK+RND  C  KGFYTYDAFIAAANSF  FGTTG+   RK+EIAAF  QTSHETTGG  +A DGP+A GYCF +E GN               G  ++GRGPIQ++   NY  AG+AI  DL+ NPD VA D T+SFKTA WFWMT Q  KPSCHDVITGQW  SAAD
Sbjct:   26 DLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE-GNQ-------------MGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAAD 184          
The following BLAST results are available for this feature:
BLAST of CX295882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CHI6_POPTR6.849e-7555.51Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI7_ORYSJ9.889e-7453.91Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI9.889e-7453.91Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI10_ORYSJ2.139e-6059.20Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR6.880e-5945.68Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA4.931e-5765.32Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI11_ORYSJ1.435e-5658.29Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_POPTR2.706e-5545.45Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_PETHY4.615e-5562.86Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_SOLLC1.485e-5361.49Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionC05076H06SK DroRLeaf1 Citrus clementina cDNA clone C05076H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295882 ID=CX295882; Name=CX295882; organism=Citrus clementina; type=EST; length=735bp
GAGGCAGGCTGGAGGAGCTGTATGTCCAGGAGGACTGTGTTGCAGCAAAT
TTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAATGGCTGCCAAAGC
CAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCCGACTCCCGTACC
TGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAATTAGCAGGGACC
TATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCTTGCCAAGGAAAA
GGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAATTCCTTTGGTGC
CTTCGGAACAACCGGTAACACCGATACTCGCAAAAGAGAAATCGCGGCCT
TTTTGGCTCAAACTTCACATGAAACTACAGGTGGCTGGCCTACTGCGCCC
GATGGTCCATATGCATGGGGATATTGCTTCAAGCAGGAGCAAGGAAACCC
TGGAGATTATTGTCAACCAAGTCAACAATGGCCATGTGCACCTGGGAAAA
AGTATTTTGGCCGAGGTCCCATCCAGATTTCATACAACTACAACTACGGT
CCAGCAGGAAAAGCCATAAACGTTGACTTGCTTCGCAACCCAGATGCTGT
GGCAAATGATCCTACTATTTCGTTCAAGACTGCTTTCTGGTTCTGGATGA
CCCGACAGTCACCAAAACCTTCATGCCACGATGTTATCACAGGCCAATGG
AAAGCATCAGCCGCCGATACTCAGCTGGTCGCCTT
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