CX295882

Overview
NameCX295882
Unique NameCX295882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39
Identity = 83/210 (39.52%), Postives = 108/210 (51.43%), Query Frame = 2
Query:   23 CPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQ-QWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWM 649
            C   +CCSKFG+CG T  YC +GCQS                                  F   +K++  + C+GK FYT  AF++A   +  F   G+    KREIAAF A  +HET               +C+  E      YC P++ QWPCA G+KY+GRGP+QIS+NYNYGPAG+AI  D L +P  VA D  ++FK A WFWM
Sbjct:   25 CQPNVCCSKFGYCGTTDEYCGDGCQS--------GPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWM 213          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.154e-36
Identity = 84/217 (38.71%), Postives = 107/217 (49.31%), Query Frame = 2
Query:   23 CPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQE-QGNPGDYCQPSQ--QWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSP 664
            C  GLCCS++G+CG    YC  GCQ                                 D    ++    D+ C GK FYT DAF++A NS+  FG  G+ D  KREIAA  A  +HET               +C+ +E  G   DYC      Q+PC+  K Y GRGPIQ+S+N+NYGPAG A N D L  P+ V+ND  +SFKTA W+WM    P
Sbjct:   28 CAEGLCCSQYGYCGTGEDYCGTGCQQ-----------GPCTTASPPPSNNVNADILTADFLNGIIDQA-DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP 219          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.813e-36
Identity = 84/216 (38.89%), Postives = 116/216 (53.70%), Query Frame = 2
Query:   23 CPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQE-QGNPGDYC-QPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSP 664
            C   LCCS+FG+CG+T AYC  GC+S                                  F   + ++    C GK FYT D+FI AAN+F  F    N+ TR REIA   A  +HET               +C+ +E  G   DYC + ++Q+PCAPGK YFGRGPIQ+S+NYNYG  G+++N++LL  P+ V+++PT++F+T  WFWM    P
Sbjct:   29 CAPNLCCSQFGYCGSTDAYCGTGCRS---------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFA---NSVTR-REIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.069e-35
Identity = 81/212 (38.21%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   38 CCSKFGFCGNTPAYCTNGCQS-----QCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQ-GNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTR 655
            CCS+ G+CGN+  YC  GCQ+      C G                              F   +  +  A C GK FYT   F+ A +++  FGT    + RKREIAA+ A  +HET                C+ +E+ G+  +YCQ SQQ+PC P K+YFGRGP+Q+S+NYNY  AGK ++ D L +PD V  DP ISFKT+ WFW+ +
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQAGPCWDPCEGDGTLTVSDIVTQE-----------------FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRK 192          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.543e-34
Identity = 91/218 (41.74%), Postives = 112/218 (51.38%), Query Frame = 2
Query:   23 CPGGLCCSKFGFCGNTPAYCTNG-CQS-QCSGXXXXXXXXXXXXXXXXXXXXXXXXXXX--RDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQ-GNPGD-YCQPSQ--QWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMT 652
            C   LCCS FGFCG    YC  G CQS  C G                             +  F+ ++     A+C GK FYT  AF++A +    FG  G++D  KREIAAF A  SHETT               C  +E+ G+ GD YC   +  Q+PCA GKKY+GRGP+Q+S+NYNY  AG+AI  D L NP+ VA D   SFK A WFWMT
Sbjct:   32 CAPNLCCSNFGFCGTGTPYCGVGNCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIGQAA-ASCPGKNFYTRAAFLSAVDP--KFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 46/98 (46.94%), Postives = 53/98 (54.08%), Query Frame = 2
Query:    2 RQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSF 295
            RQAG A+CPGGLCCS +G+CG T  YC +GCQSQC G                           +  F+ LLK RND  C   GFYTYDAFI+AA  F
Sbjct:   27 RQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  437 EQGNPGDYCQPSQ-QWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKP 670
            E GN   YC PS+ Q PCA GKKY+GRGPIQIS NYNYGPAG+AI +D L NPD VA D    +KTA  F +  +   P
Sbjct:   30 ETGNNA-YCDPSKTQKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXFLVNGEEAVP 107          
The following BLAST results are available for this feature:
BLAST of CX295882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CHIB_MAIZE3.550e-3939.52Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU2.154e-3638.71Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_BRANA2.813e-3638.89Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA1.069e-3538.21Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU1.543e-3441.74Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIC_POPTR1.551e-1846.94Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
IAMY_COILA1.714e-1758.23Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]

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Properties
Property NameValue
Genbank descriptionC05076H06SK DroRLeaf1 Citrus clementina cDNA clone C05076H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295882 ID=CX295882; Name=CX295882; organism=Citrus clementina; type=EST; length=735bp
GAGGCAGGCTGGAGGAGCTGTATGTCCAGGAGGACTGTGTTGCAGCAAAT
TTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAATGGCTGCCAAAGC
CAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCCGACTCCCGTACC
TGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAATTAGCAGGGACC
TATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCTTGCCAAGGAAAA
GGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAATTCCTTTGGTGC
CTTCGGAACAACCGGTAACACCGATACTCGCAAAAGAGAAATCGCGGCCT
TTTTGGCTCAAACTTCACATGAAACTACAGGTGGCTGGCCTACTGCGCCC
GATGGTCCATATGCATGGGGATATTGCTTCAAGCAGGAGCAAGGAAACCC
TGGAGATTATTGTCAACCAAGTCAACAATGGCCATGTGCACCTGGGAAAA
AGTATTTTGGCCGAGGTCCCATCCAGATTTCATACAACTACAACTACGGT
CCAGCAGGAAAAGCCATAAACGTTGACTTGCTTCGCAACCCAGATGCTGT
GGCAAATGATCCTACTATTTCGTTCAAGACTGCTTTCTGGTTCTGGATGA
CCCGACAGTCACCAAAACCTTCATGCCACGATGTTATCACAGGCCAATGG
AAAGCATCAGCCGCCGATACTCAGCTGGTCGCCTT
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