CX296273 | Citrus Genome Database

Overview


Name	CX296273
Unique Name	CX296273
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	298

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.391e-19
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.391e-19
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.428e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.428e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.1073 bits (196), Expect = 3.879e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX296273 vs. ExPASy Swiss-Prot

BLAST of CX296273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81


Match Name	E-value	Identity	Description
UBIQ_GEOCY	3.391e-19	95.83	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	3.391e-19	95.83	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_AGLNE	4.428e-19	95.83	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_ACECL	4.428e-19	93.75	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_XENLA	5.783e-19	95.83	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_TRYCR	5.783e-19	95.83	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_SPOFR	5.783e-19	95.83	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_SHEEP	5.783e-19	95.83	Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2	[more]
UBIQ_RAT	5.783e-19	95.83	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]
UBIQ_RABIT	5.783e-19	95.83	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05138B12SK FerrChloL1 Citrus clementina cDNA clone C05138B12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296273 ID=CX296273; Name=CX296273; organism=Citrus clementina; type=EST; length=298bp
TTCGGCAGAGGCCTCGTGCCGAATTCGGCACGAGGCCGGACCAGCAGCGT
CTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTA
CAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAG
GCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAA
GTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA