CX296273

Overview
NameCX296273
Unique NameCX296273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 83.1889 bits (204), Expect = 4.582e-16
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 3 
Query:    3 RQRPRAEFGTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            +Q+ + + G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.865e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.4925 bits (197), Expect = 2.970e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.683e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.683e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.683e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.198e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 79.337 bits (194), Expect = 6.617e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX296273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_BOVIN5.783e-1995.83Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA5.783e-1995.83Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY7.553e-1993.75Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU9.865e-1993.75Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB1.288e-1893.75Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO1.288e-1893.75Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU1.683e-1893.75Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.683e-1893.75Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.683e-1893.75Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEIMA2.198e-1893.75Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05138B12SK FerrChloL1 Citrus clementina cDNA clone C05138B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296273 ID=CX296273; Name=CX296273; organism=Citrus clementina; type=EST; length=298bp
TTCGGCAGAGGCCTCGTGCCGAATTCGGCACGAGGCCGGACCAGCAGCGT
CTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTA
CAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAG
GCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAA
GTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA
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