CX296273

Overview
NameCX296273
Unique NameCX296273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.888e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 3
Query:  159 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
The following BLAST results are available for this feature:
BLAST of CX296273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RUB1_ARATH9.888e-1163.04NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC05138B12SK FerrChloL1 Citrus clementina cDNA clone C05138B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296273 ID=CX296273; Name=CX296273; organism=Citrus clementina; type=EST; length=298bp
TTCGGCAGAGGCCTCGTGCCGAATTCGGCACGAGGCCGGACCAGCAGCGT
CTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTA
CAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAG
GCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAA
GTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA
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