CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 568
            T  S++  C  L A+  G  +HR I    L     + + L+ +YA  G I +A  VF + S +   A  WN++I G A  G   +++ L+ +M E  ++PD+ TF  +L AC+  GL++
Sbjct:  243 TMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVK 361          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  149 LDSIIQDLESSVQN-GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++S   D+   ++N G      T +S+L  C          KLH L     +  N  + + LL LYA  G+I +A QVF+ M ++++    W+S+++GY +   YE+A+ LY + +   +E +QFT   V+ AC+ L  +  G
Sbjct:  142 MESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVT--WSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +   +++ V   +     T    L+ C  L A++ G ++H  I  N L     +S+ L+ +Y+  G +D+A+QVF  M  R   +  W +LISG A  G  ++AI  + +M + G+ P++ T   +L AC+  GL+  G
Sbjct:  201 LFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVS--WTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEG 337          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP203_ARATH (Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            TF+SLL  C     +E G ++H ++     + +  +++ LL +YA    + +A + F+ M  R   +  WN++I G+A+ GE  +A+ L+ QM  E ++PD+ TF  VL +CA    I
Sbjct:  247 TFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVS--WNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAI 358          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  161 IQDLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            I+  E  +  G +   E T  S+L  C  +  +E G  +   I  N ++ N      L+ +YA  G + EA +VFD+M  R   ++  N+L + +A  G+  + + L  +M++EG+EPD+ T+  VL AC   GL++ G
Sbjct:  382 IEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSY--NTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEG 518          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TF ++L +C  +  V     +H LI       NK I++ LL LY+  G ++++  VF ++++  + A  W ++++ YA  G   DAI  +  M   G+ PD  TF  +L AC+  GL+  G
Sbjct:  237 TFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMA--WTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEG 355          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + +  +  A+ L  C +++A + G  +   +    + +N  I++ ++ +Y  F L+ +AH+VFD+MS R      W +++SGY   G+   AI LY +M + E    ++F +  VLKAC  +G I++G
Sbjct:    1 MVMDLKLIAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVT--WTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLG 126          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 34/121 (28.10%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TF +++    +L A+  G+ +H  +          + + L+ +YA  G+I+ + + F ++SN+  +   WN+++S YA  G    A++L+  M+E  ++PD  +F  VL AC   GL+  G
Sbjct:  606 TFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNK--YIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEG 724          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 36/134 (26.87%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 559
            + +D    +  G     E F  L E+C  LK++EH  K+H     +  R +  +++ ++ ++     I +A +VFD M ++   +  W+ ++  Y++ G  +DA+ L+ +M + G++P++ TF  V  ACA +G
Sbjct:  220 LYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDS--WHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVG 351          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKL-HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            GI     T  + L  C  L  V+ G  + H     N++  N  I      +Y+  G +D+A+QVF+Q + + +    WN++I+G+A  GE   A+ ++ ++E+ G++PD  ++   L AC   GL+  G
Sbjct:  205 GIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSNAAID-----MYSKCGFVDKAYQVFEQFTGKKSVV-TWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYG 327          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP369_ARATH4.348e-1131.93Pentatricopeptide repeat-containing protein At5g08... [more]
PP364_ARATH4.348e-1130.07Pentatricopeptide repeat-containing protein At5g04... [more]
PP267_ARATH4.348e-1129.50Pentatricopeptide repeat-containing protein At3g47... [more]
PP203_ARATH4.348e-1132.20Pentatricopeptide repeat-containing protein At2g46... [more]
PPR43_ARATH5.678e-1130.94Pentatricopeptide repeat-containing protein At1g14... [more]
PP411_ARATH5.678e-1131.40Pentatricopeptide repeat-containing protein At5g40... [more]
PP305_ARATH5.678e-1129.69Pentatricopeptide repeat-containing protein At4g08... [more]
PP195_ARATH5.678e-1128.10Pentatricopeptide repeat-containing protein At2g39... [more]
PP153_ARATH5.678e-1126.87Pentatricopeptide repeat-containing protein At2g15... [more]
PPR71_ARATH7.416e-1129.46Pentatricopeptide repeat-containing protein At1g34... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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