CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 568 T S++ C L A+ G +HR I L + + L+ +YA G I +A VF + S + A WN++I G A G +++ L+ +M E ++PD+ TF +L AC+ GL++ Sbjct: 243 TMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVK 361
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 2 Query: 149 LDSIIQDLESSVQN-GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++S D+ ++N G T +S+L C KLH L + N + + LL LYA G+I +A QVF+ M ++++ W+S+++GY + YE+A+ LY + + +E +QFT V+ AC+ L + G Sbjct: 142 MESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVT--WSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 2 Query: 158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + +++ V + T L+ C L A++ G ++H I N L +S+ L+ +Y+ G +D+A+QVF M R + W +LISG A G ++AI + +M + G+ P++ T +L AC+ GL+ G Sbjct: 201 LFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVS--WTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEG 337
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP203_ARATH (Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 TF+SLL C +E G ++H ++ + + +++ LL +YA + +A + F+ M R + WN++I G+A+ GE +A+ L+ QM E ++PD+ TF VL +CA I Sbjct: 247 TFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVS--WNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAI 358
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 2 Query: 161 IQDLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 I+ E + G + E T S+L C + +E G + I N ++ N L+ +YA G + EA +VFD+M R ++ N+L + +A G+ + + L +M++EG+EPD+ T+ VL AC GL++ G Sbjct: 382 IEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSY--NTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEG 518
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TF ++L +C + V +H LI NK I++ LL LY+ G ++++ VF ++++ + A W ++++ YA G DAI + M G+ PD TF +L AC+ GL+ G Sbjct: 237 TFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMA--WTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEG 355
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 2 Query: 194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + + + A+ L C +++A + G + + + +N I++ ++ +Y F L+ +AH+VFD+MS R W +++SGY G+ AI LY +M + E ++F + VLKAC +G I++G Sbjct: 1 MVMDLKLIAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVT--WTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLG 126
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 34/121 (28.10%), Postives = 65/121 (53.72%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TF +++ +L A+ G+ +H + + + L+ +YA G+I+ + + F ++SN+ + WN+++S YA G A++L+ M+E ++PD +F VL AC GL+ G Sbjct: 606 TFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNK--YIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEG 724
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 36/134 (26.87%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 559 + +D + G E F L E+C LK++EH K+H + R + +++ ++ ++ I +A +VFD M ++ + W+ ++ Y++ G +DA+ L+ +M + G++P++ TF V ACA +G Sbjct: 220 LYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDS--WHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVG 351
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKL-HRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 GI T + L C L V+ G + H N++ N I +Y+ G +D+A+QVF+Q + + + WN++I+G+A GE A+ ++ ++E+ G++PD ++ L AC GL+ G Sbjct: 205 GIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSNAAID-----MYSKCGFVDKAYQVFEQFTGKKSVV-TWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYG 327 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |