CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14 Identity = 43/131 (32.82%), Postives = 76/131 (58.02%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ GIT T+A++L+TC L + G ++H + L+ + I S L+ +Y+ G + ++ +F++ R WN++I GYA G+ E+AI L+ +M E ++P+ TF +L+ACA +GLI G Sbjct: 595 MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVT--WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 723 HSP 2 Score: 69.3218 bits (168), Expect = 1.494e-11 Identity = 42/151 (27.81%), Postives = 72/151 (47.68%), Query Frame = 2 Query: 176 SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT------------------AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 S +++ I TF S+L+ C ++ +G+++H I + + N + L+ +Y+ G+I+EA ++ + R WNS+ISGY + EDA L+ +M E G+ PD+FT+ VL CA L +G Sbjct: 473 SMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14 Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T+ S+L C L + G ++H+LI ++ +KN+ ++S LL +Y+ G + A ++FD WNS+I+ YA G ++AI +Y QM + G +P T+ +L AC+ GL+ G Sbjct: 333 TYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 39/131 (29.77%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ GI + +S L C +L A++ G ++H+++ + L + + L+ +Y G + +A ++F+ M + A WN++ISGYA+ G + A+ L+ +M + + PD TF VL AC GL+ +G Sbjct: 276 LEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVA--WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 47/171 (27.49%), Postives = 90/171 (52.63%), Query Frame = 2 Query: 77 SYPKSSPTPLLTN------QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 571 SY + T LL+ Q+ P+ ++A+DS+ +G+ + T++ L++ C +AV G + R + N R + + L+ +Y F L+++AHQ+FDQM R + W ++IS Y++ ++ A+ L M + V P+ +T+ VL++C G+ +R+ Sbjct: 20 SYSSTDQTLLLSEFTRLCYQRDLPRA-MKAMDSL-------QSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVIS--WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM 180 HSP 2 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 50/170 (29.41%), Postives = 86/170 (50.59%), Query Frame = 2 Query: 71 FSSYPKSSPTPLLTNQKAFPKTKL--QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 F P+ + T A+ K K+ +AL+ ++ L +V+ + T++S+L +C + V LH I L + + S L+ ++A G ++A VFD+M T A WNS+I G+A+ + A+ L+ +M+ G +Q T VL+AC GL L+ +G Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY----TYSSVLRSCNGMSDVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV--TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = 2 Query: 185 QNGITVQTET-FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 Q + ET FA++L +C +L ++ HG + H L+ + + + + L +Y G ID A Q FD + + WN +I GY G ++A+ LY +M G +PD TF VL AC+ GL+ G Sbjct: 511 QTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVI--WNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETG 639
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 L + + V TFASLL + ++ G ++H + L N+ + + L+ +Y+ G ID A +VF+ M NR + W S+I+G+A+ G + + QM EEGV+P++ T+ +L AC+ +GL+ G Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVIS--WTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +G+ TF ++L C L ++ G +H LI ++ S+ L+ +YA G + + QVFD+M R+ WNSLI+GYA+ G EDA+ ++ M + + PD+ TF VL AC+ G + G Sbjct: 726 DGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV-SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDG 853 HSP 2 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 44/169 (26.04%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 71 FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 FSS P+ S + + + L+ + Q++ + G+ TFA+++E C++ +++ G + H ++ + + + LL +Y + EA +F ++S+ + W ++SG+++ G YE+A+ Y +M +GV PDQ TF VL+ C+ L +R G Sbjct: 587 FSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEM---LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVL-WTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG 751 HSP 3 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 2 Query: 158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547 + D++SS G + TF SLL TC +E G + H +I L KN + + L+ +YA G +++A Q+F++M +R WN++I Y + +A L+ +M G+ D LKAC Sbjct: 415 LFMDMKSS---GYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVT--WNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKAC 539
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP276_ARATH (Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13 Identity = 49/136 (36.03%), Postives = 73/136 (53.68%), Query Frame = 2 Query: 170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 574 LES V+ I T ++LL C ++ G + H + + K I + L+ +Y+ G I + +VF+QMS + + WNSLIS Y+ GE E+A+ Y M++EG V PD TF VL AC+ GL+ G Sbjct: 479 LESEVR--ILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVS--WNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEG 610
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13 Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 2 Query: 215 FASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 F SLLETC + + + G +H+ L+ +L + + L RLYA+ ++ A VFD++ + W+ +I YA E A+ LY++M GV P ++T+P VLKACAGL I G Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDG 122 HSP 2 Score: 73.559 bits (179), Expect = 7.923e-13 Identity = 41/129 (31.78%), Postives = 65/129 (50.39%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +GI T +L C L A+ HG H + N I + L+ +Y G +D A +VFD M R + WN+++ G+ G ++A++L+ M+E GV PD+ T +L AC+ GL+ G Sbjct: 403 SGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVS--WNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEG 529
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13 Identity = 39/125 (31.20%), Postives = 71/125 (56.80%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 559 ++G+ + TF +L+ C + + + GI LH L+ + + LL +Y+ G +++AH++FD++ +R+ W +L SGY G + +AI L+ +M E GV+PD + +VL AC +G Sbjct: 104 KHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVT--WTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVG 226 HSP 2 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 37/131 (28.24%), Postives = 69/131 (52.67%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 V+ G+ + +L C + ++ G + + + ++KN + + L+ LYA G +++A VFD M + W+++I GYA ++ I L+ QM +E ++PDQF+ L +CA LG + +G Sbjct: 204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVT--WSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |