CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12 Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547 V + + T S+L C LK +E G +H+L+ L + + L+ +Y G +DEA VFD+M R W +I+GY E G+ E+A+ L M+ EGV P+ T ++ C Sbjct: 210 VNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVIT--WTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVC 329 HSP 2 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 37/121 (30.58%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T+ + + +LK+++ G+ +H I + ++K + + LL +Y FG ++ A VFD M NR + WN++ISGY G DA+ ++ M E V+ D T +L C L + +G Sbjct: 119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVIS--WNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG 237
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12 Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 161 IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ + V G+ TF S+L C QL A+E G ++H I + L ++ + S LL +Y+ G EA ++F+ + + + W +IS Y G+ +A+ + +M++ G++PD T VL AC GLI G Sbjct: 395 VEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVS--WTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12 Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 562 T ++L C L G +LH T+ + +N + + L+ +YA G++DEA+ VF MS + + WN++++GY+++G +EDA+ L+ +M+EE ++ D T+ + A GL Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS--WNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12 Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 574 +Q G + + +A++L + +E G+++H L + + S L+ +Y+ G +D A + F+ M R +++ WNS+ISGYA G+ E+A+ L+ M+ +G PD TF VL AC+ GL+ G Sbjct: 611 LQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS--WNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 I T+ S+L C Q A+ G+KLH + N L + + + L +Y G +++A +F Q+ + PWN+LI+ + G E A+ L+ +M +EGV+PD TF +L AC+ GL+ G Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV--PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +G + S+L C A+ G K+H I L N + + L+ +YA G +++A VF+ M +R + W ++IS Y G DA+AL+ ++++ G+ PD F L AC+ GL+ G Sbjct: 303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS--WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 40/136 (29.41%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL--LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + +++G T T S+L C L A++ G +H I L + + + L+ +YA G I+ AHQVF+ + +++ + WN++I G+A G + + L+ +M + G++PD TF +L AC+ G++ +G Sbjct: 356 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS--WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489 HSP 2 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 36/131 (27.48%), Postives = 68/131 (51.91%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ + T +++ C Q ++E G ++H I + N I + L+ LY+ G ++ A +F+++ + + WN+LI GY + Y++A+ L+ +M G P+ T +L ACA LG I +G Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 179 SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +++N ++V TF+S L C L +++ G+++H L K +S+ L+ +YA G I A VF++M T WN+LISGY+ G A+ + M++ +P+ TF VL C+ GLI G Sbjct: 440 ALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME--TIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQG 569
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVG 574 T + L C Q+ A+E G +H + ++ +R N + + L+ +Y+ G ++EA VF+ + A WN++I+GYA G +DA+ L+ +M+ G++P TF L+ACA GL+ G Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVA--WNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEG 380
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + + TFA++L+ ++ G +LH I + +N S L+ +YA G I +A QVF++M +R A + WN+LIS +A+ G+ E AI + +M E G++PD + VL AC+ G + G Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS--WNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQG 572 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |