CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TF +LL C A+ G +H L+ IS+ L+ +Y G + +A ++FDQ SN+ + WNS+I+GYA+ G AI L+ M + G +PD T+ VL +C GL++ G Sbjct: 223 TFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVS--WNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEG 342
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 GI T AS+L+ C L +E G ++H + I S L +Y+ G +++ + VF + N+ + WN++ISG + G+ ++A+ L+ +M EG+EPD TF ++ AC+ G + G Sbjct: 418 GIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVS--WNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543 HSP 2 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 39/128 (30.47%), Postives = 65/128 (50.78%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 GI T +L C + +E G +LH + ++ ++ L+ +YA G + +A + FD + R W SLISGY + + E+A+ LY +M+ G+ P+ T VLKAC+ L + +G Sbjct: 317 GIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVAL--WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 37/130 (28.46%), Postives = 67/130 (51.54%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + + + S L C A+ G+ +H + N+ N + + L+ +Y G +D+A +F +M R + +++ISG A GE E A+ ++ +M +EG+EPD + VL AC+ GL++ G Sbjct: 227 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTY--SAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 354
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 2 Query: 212 TFASLLETCYQLK--AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TF S+L + +V+ G + H + L +SS LL +YA G IDE+ +VF++MS + F W S+IS Y+ G++E + L+ +M +E V PD TF VL AC G++ G Sbjct: 474 TFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFV--WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKG 594
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 38/135 (28.15%), Postives = 70/135 (51.85%), Query Frame = 2 Query: 170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ V +G+ S+L C + + G+++H ++ + L N + + LL +YA G + +A VF+ + + + WN+++ G G ++AI L+ +M EG+ PD+ TF VL +C GLI G Sbjct: 303 VDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS--WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEG 435
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 38/120 (31.67%), Postives = 69/120 (57.50%), Query Frame = 2 Query: 218 ASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +S+L+ C + +V G ++H + ++ +R + + + L+ +YA G I++A F++M + + W SLI+GY G +E AI LY +ME E ++P+ TF +L AC+ G +G Sbjct: 321 SSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRS--WTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELG 438
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G+ T ASLL C QL + G +LH N + + L+ +YA G +A VF + + WNS+ISGY+ G A++ Y +M E+G++PD+ TF VL AC G + G Sbjct: 394 GLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSI--KAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEG 519
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 GI SLL C Q A+E G +H I N + +K + + L+ +YA G I+ A +VF ++ R + W SLI G A G A+ LY++ME GV D TF VL AC G + G Sbjct: 274 GIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTAS--WTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEG 399 HSP 2 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G+ T +L++ +L+ V G K+H L + +S+ L+ +YA+ G I+ H+VFD+M R + WN LIS Y G +EDAI ++ +M +E ++ D+ T L AC+ L + +G Sbjct: 41 GLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVS--WNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIG 167
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 38/123 (30.89%), Postives = 66/123 (53.66%), Query Frame = 2 Query: 206 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T T+ S++ +L H +H ++ + L KN +++ L+ +YA G I A +FD MS R WN++I GY G + A+ L+ +M++ ++P+ TF V+ AC+ GL+ G Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT--WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2 Query: 320 SSKLLRLYATFGL----IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL---YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++++LR AT L +D AH++F+QM R F+ WN++I G++E E + IA+ Y M +E VEP++FTFP VLKACA G I+ G Sbjct: 58 AAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS--WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEG 147 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |