CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            G+   + T  +LL +C  + A+  G+ LHR+           +S+ L+ +YA  G ++ A  VF+ M  R      WNS+I GY   G   +AI+ + +M   GV P+  TF  +L  C+  GL++ G
Sbjct:  203 GVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLT--WNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEG 328          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 39/132 (29.55%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVLKACAGLGLIRVG 574
            + GI     TF++ L+ C  L A+E G+++H             + + L+ +Y+  G I+EA +VF ++ +R+  +  WN++I+G+   G    A+  +  M+E  ++  PD+FT   +LKAC+  G+I  G
Sbjct:  100 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLIS--WNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 45/168 (26.79%), Postives = 74/168 (44.05%), Query Frame = 2
Query:   71 FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            F   P+SS   +  N      T    +           + G++V + T   L+  C   + +  G  LH       L     + +  + +Y   G ++   ++FD+M  +      WN++ISGY++ G   D + LY QM+  GV PD FT   VL +CA LG  ++G
Sbjct:  111 FEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLIT--WNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 276          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T    L  C QL A++ GI +HR I    L  N  + + L+ +YA  G I EA  VF  +  R +  +   ++I G A  G+   AI+ + +M + G+ PD+ TF  +L AC   G+I+ G
Sbjct:  391 TMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY--TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTG 509          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 41/143 (28.67%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  134 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 562
            TK Q   S +   E  + +G      TF+S++ +C  L+ + +G ++H  +       N  + S L  LY+  G   EA ++F  + N  A    W  +IS      ++ +A+  Y +M + GV P++FTF ++L A + LGL
Sbjct:  100 TKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQN--ADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLGL 240          

HSP 2 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  263 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            G+ +H  +    L +N  + + LL LY     I  A ++FD+MS+RT FA  W  +IS + +  E+  A++L+ +M   G  P++FTF  V+++CAGL  I  G
Sbjct:   42 GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFA--WTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYG 143          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 42/143 (29.37%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  161 IQDLESSVQNG-----ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +Q+LE  V  G     +   + T  ++L +C  L A+  G ++H     N L  +  + S L+ +YA  G +  + +VFDQ+  +      WN +I  Y   G  ++AI L   M  +GV+P++ TF  V  AC+  G++  G
Sbjct:  497 MQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT--WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP277_ARATH (Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  206 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + TF SL++ C  L+ V  G  L+  I       N  + + +L +Y++ G ++ A ++FD ++NR A A  WN++I G  +  + ED +  +  M   GV+P QFT+  VL  C+ LG   +G
Sbjct:  199 SSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVA--WNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLG 319          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  341 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +A  GLID+A  +FD+M  R   +  WNS+ISG+   G ++DA+ ++ +M+E+ V+PD FT   +L ACA LG    G
Sbjct:  202 FAKCGLIDQAQNLFDEMPQRNGVS--WNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277          

HSP 2 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 559
            T  SLL  C  L A E G  +H  I  N    N  + + L+ +Y   G I+E   VF+    +      WNS+I G A  G  E A+ L+ ++E  G+EPD  +F  VL ACA  G
Sbjct:  260 TMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSC--WNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSG 373          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            G+ V      S+L  C QL A++ G   H  I  N ++    +++ L+ LYA  G +++A +VF  M  +  +   W+S ++G A  G  E  + L+  M+++GV P+  TF  VL+ C+ +G +  G
Sbjct:  235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYT--WSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEG 360          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 37/117 (31.62%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  215 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            F+S++  C  L  +  G +LH  +       N  I+S L+ +Y+  G I  A ++FD+M+     +  W ++I G+A  G   +A++L+ +M+ +GV+P+Q  F  VL AC+ +GL+
Sbjct:  346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS--WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP284_ARATH1.144e-1131.25Pentatricopeptide repeat-containing protein At3g56... [more]
PP232_ARATH1.144e-1129.55Putative pentatricopeptide repeat-containing prote... [more]
PP223_ARATH1.144e-1126.79Putative pentatricopeptide repeat-containing prote... [more]
PP169_ARATH1.144e-1133.88Pentatricopeptide repeat-containing protein At2g22... [more]
PP430_ARATH1.494e-1128.67Pentatricopeptide repeat-containing protein At5g52... [more]
PP285_ARATH1.494e-1129.37Pentatricopeptide repeat-containing protein At3g57... [more]
PP277_ARATH1.494e-1132.52Pentatricopeptide repeat-containing protein At3g50... [more]
PP200_ARATH1.494e-1142.31Pentatricopeptide repeat-containing protein At2g42... [more]
PP410_ARATH2.549e-1130.47Putative pentatricopeptide repeat-containing prote... [more]
PP251_ARATH2.549e-1131.62Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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