CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G+ + T +LL +C + A+ G+ LHR+ +S+ L+ +YA G ++ A VF+ M R WNS+I GY G +AI+ + +M GV P+ TF +L C+ GL++ G Sbjct: 203 GVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLT--WNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEG 328
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 39/132 (29.55%), Postives = 72/132 (54.55%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE--PDQFTFPRVLKACAGLGLIRVG 574 + GI TF++ L+ C L A+E G+++H + + L+ +Y+ G I+EA +VF ++ +R+ + WN++I+G+ G A+ + M+E ++ PD+FT +LKAC+ G+I G Sbjct: 100 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLIS--WNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 45/168 (26.79%), Postives = 74/168 (44.05%), Query Frame = 2 Query: 71 FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 F P+SS + N T + + G++V + T L+ C + + G LH L + + + +Y G ++ ++FD+M + WN++ISGY++ G D + LY QM+ GV PD FT VL +CA LG ++G Sbjct: 111 FEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLIT--WNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 276
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T L C QL A++ GI +HR I L N + + L+ +YA G I EA VF + R + + ++I G A G+ AI+ + +M + G+ PD+ TF +L AC G+I+ G Sbjct: 391 TMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY--TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTG 509
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11 Identity = 41/143 (28.67%), Postives = 71/143 (49.65%), Query Frame = 2 Query: 134 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 562 TK Q S + E + +G TF+S++ +C L+ + +G ++H + N + S L LY+ G EA ++F + N A W +IS ++ +A+ Y +M + GV P++FTF ++L A + LGL Sbjct: 100 TKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQN--ADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLGL 240 HSP 2 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 2 Query: 263 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G+ +H + L +N + + LL LY I A ++FD+MS+RT FA W +IS + + E+ A++L+ +M G P++FTF V+++CAGL I G Sbjct: 42 GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFA--WTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYG 143
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11 Identity = 42/143 (29.37%), Postives = 71/143 (49.65%), Query Frame = 2 Query: 161 IQDLESSVQNG-----ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +Q+LE V G + + T ++L +C L A+ G ++H N L + + S L+ +YA G + + +VFDQ+ + WN +I Y G ++AI L M +GV+P++ TF V AC+ G++ G Sbjct: 497 MQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT--WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP277_ARATH (Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11 Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 2 Query: 206 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + TF SL++ C L+ V G L+ I N + + +L +Y++ G ++ A ++FD ++NR A A WN++I G + + ED + + M GV+P QFT+ VL C+ LG +G Sbjct: 199 SSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVA--WNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLG 319
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11 Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 341 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +A GLID+A +FD+M R + WNS+ISG+ G ++DA+ ++ +M+E+ V+PD FT +L ACA LG G Sbjct: 202 FAKCGLIDQAQNLFDEMPQRNGVS--WNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277 HSP 2 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 559 T SLL C L A E G +H I N N + + L+ +Y G I+E VF+ + WNS+I G A G E A+ L+ ++E G+EPD +F VL ACA G Sbjct: 260 TMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSC--WNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSG 373
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G+ V S+L C QL A++ G H I N ++ +++ L+ LYA G +++A +VF M + + W+S ++G A G E + L+ M+++GV P+ TF VL+ C+ +G + G Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYT--WSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEG 360
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 37/117 (31.62%), Postives = 67/117 (57.26%), Query Frame = 2 Query: 215 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 F+S++ C L + G +LH + N I+S L+ +Y+ G I A ++FD+M+ + W ++I G+A G +A++L+ +M+ +GV+P+Q F VL AC+ +GL+ Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS--WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |