CX296277

Overview
NameCX296277
Unique NameCX296277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3375 contig Ccv1_Contig3375:202..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  243 ESTPFSDEH--QSLAKIKRPQPP-SYLNSCSASGDEKKPKRQ------RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            ++T  SD+    ++ ++KR     + + S  + GD K+          R+  +RG+RQRPWG+WAAEIRDP +G RVWLGT++T EE
Sbjct:   46 DATDSSDDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEE 132          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  207 PFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKR----QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            P A+  Q  H        D +Q+L     PQ  S  +S ++S   K+  +      K  YRG+RQR WGKW AEIR+PRK  R WLGTF TAE+
Sbjct:    3 PLASQHQHNH------LEDNNQTLTH-NNPQSDSTTDSSTSSAQRKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAED 89          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  306 SYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            S+ +    S  +KK K + K +YRG R R WGKW +EIR+PRK  R+WLGTF TAE
Sbjct:    4 SHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAE 59          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 42/98 (42.86%), Postives = 50/98 (51.02%), Query Frame = 3
Query:  258 SDEHQSLAKIKRPQPPSYLN-----------------------SCSA--SGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            S  HQ  ++I  P PP++ N                       SC A  SG   KP +    LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEE
Sbjct:   93 SQIHQIQSQIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTK----LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEE 186          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  327 ASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            +S D++K +  ++ +YRG+R R WGKW +EIR+PRK  R+WLGTF TAE
Sbjct:    4 SSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAE 52          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  171 SRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPK---RQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEE 476
            S V+ SD      F  + Q  + FE    S   +   KI  P    ++   + +   +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+TA E
Sbjct:   90 SEVSVSDF----DFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIE 191          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 3
Query:  258 SDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            S  H+S   ++ P P     S     ++K   +Q    +RG+R R WGKW +EIR+PRK  R+WLGTF+T E
Sbjct:    4 SSSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPN--FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPE 73          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 3
Query:  246 STPFSDEHQSL---AKIKRPQPPSYLNSCSASGDEKKP-----KRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEE 476
            S+  SDE +S     KI+ P+  + ++S     ++  P        +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+
Sbjct:   98 SSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 183          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 3
Query:  198 PNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKK----PKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            PN+ F   K +P           HQ   ++   +  S +++ S +    K       + KNLYRG+RQR WGKW AEIR P+   R+WLGTF TAE+
Sbjct:   11 PNTSFGVNKSMPLGLNQLTPYQIHQIQNQLNHRR--STISNLSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEK 105          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3
Query:  363 KNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEE 476
            K  YRG+RQRPWGK+AAEIRDP RKG RVWLGTF+TA E
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIE 180          
The following BLAST results are available for this feature:
BLAST of CX296277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PTI6_SOLLC9.684e-1241.38Pathogenesis-related genes transcriptional activat... [more]
ABI4_ARATH9.684e-1242.55Ethylene-responsive transcription factor ABI4 OS=A... [more]
ERF42_ARATH1.265e-1153.57Ethylene-responsive transcription factor ERF042 OS... [more]
RAP24_ARATH2.157e-1142.86Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF43_ARATH2.157e-1155.10Ethylene-responsive transcription factor ERF043 OS... [more]
EF102_ARATH2.818e-1140.57Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF39_ARATH4.806e-1141.67Ethylene-responsive transcription factor ERF039 OS... [more]
EF100_ARATH4.806e-1145.35Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF56_ARATH6.277e-1138.14Ethylene-responsive transcription factor ERF056 OS... [more]
ERF5_TOBAC8.198e-1179.49Ethylene-responsive transcription factor 5 OS=Nico... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138C05SK FerrChloL1 Citrus clementina cDNA clone C05138C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296277 ID=CX296277; Name=CX296277; organism=Citrus clementina; type=EST; length=478bp
ACGAGGGTAAACCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTATAATC
GCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATT
ATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACT
TCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCC
AACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTAC
TCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAAC
CCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCC
AAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGG
CAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGC
TCGGCACATTCAACACTGCCGAAGAAGC
back to top