CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALTI (D-cysteine desulfhydrase OS=Salmonella typhi GN=dcyD PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALSV (D-cysteine desulfhydrase OS=Salmonella schwarzengrund (strain CVM19633) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALPK (D-cysteine desulfhydrase OS=Salmonella paratyphi A (strain AKU_12601) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYPGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALPB (D-cysteine desulfhydrase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALPA (D-cysteine desulfhydrase OS=Salmonella paratyphi A GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYPGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALNS (D-cysteine desulfhydrase OS=Salmonella newport (strain SL254) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALHS (D-cysteine desulfhydrase OS=Salmonella heidelberg (strain SL476) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALG2 (D-cysteine desulfhydrase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALEP (D-cysteine desulfhydrase OS=Salmonella enteritidis PT4 (strain P125109) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALDC (D-cysteine desulfhydrase OS=Salmonella dublin (strain CT_02021853) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
DCYD_SALTI1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella typhi GN=dc... [more]
DCYD_SALSV1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella schwarzengr... [more]
DCYD_SALPK1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella paratyphi A... [more]
DCYD_SALPB1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella paratyphi B... [more]
DCYD_SALPA1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella paratyphi A... [more]
DCYD_SALNS1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella newport (st... [more]
DCYD_SALHS1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella heidelberg ... [more]
DCYD_SALG21.463e-1540.63D-cysteine desulfhydrase OS=Salmonella gallinarum ... [more]
DCYD_SALEP1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella enteritidis... [more]
DCYD_SALDC1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella dublin (str... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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