CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCM (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++
Sbjct:   15 PTPIQPLKRLSQHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVA 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_RHILO (1-aminocyclopropane-1-carboxylate deaminase OS=Rhizobium loti GN=acdS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  291 TPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            TPI K +    +L    E++ KR+D  SG+   GNK+RKLE+++ DA+A  AD ++T+GG+QSNH R  A  A  + + C L+  +     D      GN+L+ R++GA + L+
Sbjct:   15 TPIEKLDRLGKHLGGKVEIYAKREDCNSGLAFGGNKLRKLEYVIPDAIASDADTLVTVGGVQSNHTRMVAAVAAKIGMKCLLVHESWVPHEDVVYDRVGNILLSRILGAEVRLV 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_CRYNE (Probable 1-aminocyclopropane-1-carboxylate deaminase OS=Cryptococcus neoformans GN=CNB00190 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  222 ASPSWASHLTPIPSHVFSLGHFPTPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---TGNLLVERLVGAHIEL 620
            ++P++ + L  IP   F  G  P+PI    LPNL        +++ KR+D  SG+   GNKVRKLE+L+ADA A+G + ++++GG+QSNH RA    A    L    +    +  V  DP L   TGN+L+ RL+G  + L
Sbjct:    2 STPAYLTKLESIPKEKFLFG--PSPISY--LPNLTAVLGGKVKLYAKREDCNSGLAYGGNKVRKLEYLVADAKAKGCNTLVSVGGVQSNHTRAVTAVAVASGLKAVTV---QEKWVPIDPPLYSETGNILLSRLMGGDVRL 135          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALPC (D-cysteine desulfhydrase OS=Salmonella paratyphi C (strain RKS4594) GN=dcyD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R     A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTVAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_VARPS (1-aminocyclopropane-1-carboxylate deaminase OS=Variovorax paradoxus (strain S110) GN=acdS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P H  + G  PTPIH  K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L S
Sbjct:    2 NLKKFPRHALTFG--PTPIHPLKRLSAHLGGEVELYAKREDCNSGLAFGGNKTRKLEYLIPEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDS 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_METPP (1-aminocyclopropane-1-carboxylate deaminase OS=Methylibium petroleiphilum (strain PM1) GN=acdS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            +L   P H  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L
Sbjct:    2 NLQRFPRHPLTFG--PTPIQPLKRLSAHLGGQVELYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRILGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SHIB3 (D-cysteine desulfhydrase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dcyD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLNLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURA4 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia ambifaria (strain MC40-6) GN=acdS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVKLYAKREDCNSGLAFGGNKTRKLEYLIPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYDDPVYDRVGNIQLSRMMGADVRLVA 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_ACIAC (1-aminocyclopropane-1-carboxylate deaminase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=acdS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            +L   P H  + G  PTPIH  K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L
Sbjct:    2 NLQKFPRHALTFG--PTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOUT (D-cysteine desulfhydrase OS=Escherichia coli (strain UTI89 / UPEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
1A1D_BURCM2.495e-1539.661-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_RHILO3.259e-1537.721-aminocyclopropane-1-carboxylate deaminase OS=Rhi... [more]
1A1D_CRYNE3.259e-1538.30Probable 1-aminocyclopropane-1-carboxylate deamina... [more]
DCYD_SALPC4.256e-1539.84D-cysteine desulfhydrase OS=Salmonella paratyphi C... [more]
1A1D_VARPS4.256e-1538.171-aminocyclopropane-1-carboxylate deaminase OS=Var... [more]
1A1D_METPP4.256e-1537.981-aminocyclopropane-1-carboxylate deaminase OS=Met... [more]
DCYD_SHIB35.558e-1541.59D-cysteine desulfhydrase OS=Shigella boydii seroty... [more]
1A1D_BURA45.558e-1536.641-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_ACIAC5.558e-1537.211-aminocyclopropane-1-carboxylate deaminase OS=Aci... [more]
DCYD_ECOUT9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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