CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO5E (D-cysteine desulfhydrase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO57 (D-cysteine desulfhydrase OS=Escherichia coli O157:H7 GN=dcyD PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO55 (D-cysteine desulfhydrase OS=Escherichia coli (strain 55989 / EAEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO45 (D-cysteine desulfhydrase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO27 (D-cysteine desulfhydrase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_DIAST (1-aminocyclopropane-1-carboxylate deaminase OS=Diaphorobacter sp. (strain TPSY) GN=acdS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            +L   P H  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+A G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L
Sbjct:    2 NLQKFPRHPLTFG--PTPIQPLKRLSQHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIAGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRILGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_YERE8 (D-cysteine desulfhydrase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dcyD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLT-GNLLVERLVGAHI 614
            TP+ K +  +     E+++KRDD++ + L GNK+RKLEFL ADA+ QGAD ++T G IQSNH R  A  A  L L C  +L  + +   Q+  LT GN L+  L    +
Sbjct:   20 TPLEKLSRLSDYLGREIYIKRDDVTPLALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALLE-NPIGTSQENYLTNGNRLLLDLFNVEV 127          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SHISS (D-cysteine desulfhydrase OS=Shigella sonnei (strain Ss046) GN=dcyD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGVIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO7I (D-cysteine desulfhydrase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD+  M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVIPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SHIFL (D-cysteine desulfhydrase OS=Shigella flexneri GN=dcyD PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRD+++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDEVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
DCYD_ECO5E9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O157:... [more]
DCYD_ECO579.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O157:... [more]
DCYD_ECO559.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]
DCYD_ECO459.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O45:K... [more]
DCYD_ECO279.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O127:... [more]
1A1D_DIAST1.238e-1437.981-aminocyclopropane-1-carboxylate deaminase OS=Dia... [more]
DCYD_YERE82.112e-1442.20D-cysteine desulfhydrase OS=Yersinia enterocolitic... [more]
DCYD_SHISS2.112e-1441.59D-cysteine desulfhydrase OS=Shigella sonnei (strai... [more]
DCYD_ECO7I2.112e-1441.59D-cysteine desulfhydrase OS=Escherichia coli O7:K1... [more]
DCYD_SHIFL2.758e-1440.71D-cysteine desulfhydrase OS=Shigella flexneri GN=d... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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