CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SHIF8 (D-cysteine desulfhydrase OS=Shigella flexneri serotype 5b (strain 8401) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRD+++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDEVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_KLEP7 (D-cysteine desulfhydrase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPHNT--EVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP L  +   E+++KRDD + + + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    +E+
Sbjct:   18 PTPLEY--LPRLSDHLGREIFIKRDDTTPLAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTRAENYLSNGNRLLLDLFNTQVEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_KLEP3 (D-cysteine desulfhydrase OS=Klebsiella pneumoniae (strain 342) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPHNT--EVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP L  +   E+++KRDD + + + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    +E+
Sbjct:   18 PTPLEY--LPRLSDHLGREIFIKRDDTTPLAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTGAENYLSNGNRLLLDLFNTQVEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ESCF3 (D-cysteine desulfhydrase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ + + GNKVRKLEFL ADA+ +GAD ++T G IQSNH R  A  A  L L C  +L        ++    GN L+  L    +E+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPLAMGGNKVRKLEFLAADALREGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTQAENYLSNGNRLLLDLFNVQVEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_VARPD (1-aminocyclopropane-1-carboxylate deaminase OS=Variovorax paradoxus GN=acdS PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            +L   P HV + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L
Sbjct:    2 NLKKFPRHVLTFG--PTPIQPLKRLSAHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLIPEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURPP (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=acdS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L     ++ KR+D  SG    GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L++
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSDHLGGKVHLYAKREDCNSGFAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVA 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_YERPS (D-cysteine desulfhydrase OS=Yersinia pseudotuberculosis GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 533
            TP+ K +  +     E+++KRDD++ + L GNK+RKLEFL ADA+ QGAD ++T G IQSNH R  A  A  L L C  +L
Sbjct:   20 TPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALL 100          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_YERPP (D-cysteine desulfhydrase OS=Yersinia pestis (strain Pestoides F) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 533
            TP+ K +  +     E+++KRDD++ + L GNK+RKLEFL ADA+ QGAD ++T G IQSNH R  A  A  L L C  +L
Sbjct:   20 TPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALL 100          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_YERPN (D-cysteine desulfhydrase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 533
            TP+ K +  +     E+++KRDD++ + L GNK+RKLEFL ADA+ QGAD ++T G IQSNH R  A  A  L L C  +L
Sbjct:   20 TPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALL 100          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_YERPE (D-cysteine desulfhydrase OS=Yersinia pestis GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 533
            TP+ K +  +     E+++KRDD++ + L GNK+RKLEFL ADA+ QGAD ++T G IQSNH R  A  A  L L C  +L
Sbjct:   20 TPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALL 100          
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
DCYD_SHIF82.758e-1440.71D-cysteine desulfhydrase OS=Shigella flexneri sero... [more]
DCYD_KLEP73.603e-1440.71D-cysteine desulfhydrase OS=Klebsiella pneumoniae ... [more]
DCYD_KLEP33.603e-1440.71D-cysteine desulfhydrase OS=Klebsiella pneumoniae ... [more]
DCYD_ESCF33.603e-1439.82D-cysteine desulfhydrase OS=Escherichia fergusonii... [more]
1A1D_VARPD3.603e-1437.211-aminocyclopropane-1-carboxylate deaminase OS=Var... [more]
1A1D_BURPP3.603e-1435.881-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
DCYD_YERPS4.705e-1448.15D-cysteine desulfhydrase OS=Yersinia pseudotubercu... [more]
DCYD_YERPP4.705e-1448.15D-cysteine desulfhydrase OS=Yersinia pestis (strai... [more]
DCYD_YERPN4.705e-1448.15D-cysteine desulfhydrase OS=Yersinia pestis bv. An... [more]
DCYD_YERPE4.705e-1448.15D-cysteine desulfhydrase OS=Yersinia pestis GN=dcy... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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