CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_YERP3 (D-cysteine desulfhydrase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dcyD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 533
            TP+ K +  +     E+++KRDD++ + L GNK+RKLEFL ADA+ QGAD ++T G IQSNH R  A  A  L L C  +L
Sbjct:   20 TPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALL 100          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_RALSO (1-aminocyclopropane-1-carboxylate deaminase OS=Ralstonia solanacearum GN=acdS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            +L   P H  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ + +A G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L
Sbjct:    2 NLNKHPRHPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPEVLAGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYADAVYDRVGNIELSRILGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_AGRRK (1-aminocyclopropane-1-carboxylate deaminase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=acdS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  288 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISK 629
            PT I K      +L    +++ KR+D  SG+   GNK+RKLE+++ DA+A  AD +++IGG+QSNH R  A  A  +   C L+  +     D      GN+L+ R++GA ++++ +
Sbjct:   14 PTHIEKLERLSEHLGGKVQLYAKREDCNSGLAFGGNKLRKLEYIIPDAIASNADTLVSIGGVQSNHTRMIAAVAAKIGFKCRLVQESWVPHEDAVYDRVGNILLSRIMGADVQMVDE 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEUD (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas sp. (strain ACP) GN=acdS PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            +L   P +  + G  PTPI        +L     ++ KR+D  SG+   GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV 129          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURM1 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=acdS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+ Q AD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSEHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPDALEQRADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYDDPVYDRVGNIQLSRMMGADVRLV 129          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BRASO (1-aminocyclopropane-1-carboxylate deaminase OS=Bradyrhizobium sp. (strain ORS278) GN=acdS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  270 FSLGHFPTPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            +SL    TPI   +LP L        +++ KRDD  SG+ + GNK+RKLE+++ DA+   AD +++IGG+QSNH R  A  A  + + C ++  +     D      GN+L+ RL+GA   ++
Sbjct:   10 YSLTFGVTPIE--HLPRLTAALGGKVQIYAKRDDCNSGLAMGGNKLRKLEYIVPDAIESNADTLVSIGGVQSNHTRMVAATAAKIGMKCVVVQESWVPHEDAVYDRVGNILMTRLMGADSRIV 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_SCHPO (Probable 1-aminocyclopropane-1-carboxylate deaminase OS=Schizosaccharomyces pombe GN=SPAC922.03 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  288 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKE 632
            PTPI         L    E++ KR+D  SG+   GNK+RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L LDC LI        D      GN+ + R+V A + L S +
Sbjct:   15 PTPITSMKRLSKTLGGKVEIFAKREDCNSGLAFGGNKIRKLEYLIPEAIDGGYDTLVSIGGIQSNQTRQVAAVAAHLGLDCVLIQEDWVDYKDTMYDRVGNIELSRIVNADVRLDSSK 132          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BRASB (1-aminocyclopropane-1-carboxylate deaminase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=acdS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  291 TPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            TPI   +LP L        +++ KRDD  SG+ + GNK+RKLE+++ DA+   AD +++IGG+QSNH R  A  A  + + C ++  +     D      GN+L+ RL+GA   ++
Sbjct:   17 TPIE--HLPRLTAALGGKVQIYAKRDDCNSGLAMGGNKLRKLEYIVPDAIESNADTLVSIGGVQSNHTRMVAATAAKIGMKCVVVQESWVPHEDAVYDRVGNILMTRLMGADSRIV 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURXL (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia xenovorans (strain LB400) GN=acdS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            +L   P +  + G  PTPI        +L     ++ KR+D  SG+   GNK RKLE+L+ + +AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEVLAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV 129          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSES0 (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas sp. (strain 6G5) GN=acdS PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L
Sbjct:   19 TPLKRLS-QHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRL 128          
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
DCYD_YERP34.705e-1448.15D-cysteine desulfhydrase OS=Yersinia pseudotubercu... [more]
1A1D_RALSO6.145e-1437.211-aminocyclopropane-1-carboxylate deaminase OS=Ral... [more]
1A1D_AGRRK6.145e-1435.041-aminocyclopropane-1-carboxylate deaminase OS=Agr... [more]
1A1D_PSEUD8.026e-1435.381-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_BURM18.026e-1436.151-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BRASO8.026e-1435.771-aminocyclopropane-1-carboxylate deaminase OS=Bra... [more]
1A1D_SCHPO1.048e-1338.98Probable 1-aminocyclopropane-1-carboxylate deamina... [more]
1A1D_BRASB1.788e-1336.211-aminocyclopropane-1-carboxylate deaminase OS=Bra... [more]
1A1D_BURXL2.335e-1334.621-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_PSES03.050e-1336.941-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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