CX296287

Overview
NameCX296287
Unique NameCX296287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.487e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMIAINLDL +GG SR+LKTAAYGHFGR+D DFTWE VKPLK+EKPQ
Sbjct:  347 FRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDADFTWETVKPLKWEKPQ 395          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.222e-17
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI+INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  345 FRPGMISINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDK 391          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  345 FRPGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDK 391          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.085e-17
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI+INLDLKRGGN RF KTAAYGHFGR+DPDF+WE VK LK EK
Sbjct:  343 FRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.556e-17
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = -2
Query:  349 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 483
            FRPGMIAINLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LK
Sbjct:  343 FRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.066e-17
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI+INLDLK+GG  RF+KTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  345 FRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDK 391          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  337 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 483
            FRPG+I INL LKRGG  R+LKTAAYGHFGR+DPDFTWEVVKPL+ EKP
Sbjct:  344 FRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKP 391          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  367 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 483
            FRPGMIAINLDLKRGGNSRFLKTAAYGHFGR+DPDFTWE
Sbjct:  343 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = -2
Query:  349 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 483
            FRPGMIAINLDL RGGNSR+ KTAAYGHFGR+DPDFTWE VK LK
Sbjct:  343 FRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = -2
Query:  349 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 483
            FRPGMIAINLDLKRGGN R+ KTAAYGHFGR+DPDFTWE VK LK
Sbjct:  343 FRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
The following BLAST results are available for this feature:
BLAST of CX296287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
METK1_ATRNU5.487e-1884.00S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK3_HORVU1.222e-1783.33S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK1_HORVU1.596e-1783.33S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK1_VITVI2.085e-1783.33S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK3_VITVI3.556e-1788.89S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK2_HORVU6.066e-1781.25S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK_MUSAC7.923e-1781.63S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK_CAMSI7.923e-1797.44S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK4_POPTR7.923e-1786.67S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK1_ACTCH7.923e-1786.67S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]

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Properties
Property NameValue
Genbank descriptionC05138D05SK FerrChloL1 Citrus clementina cDNA clone C05138D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296287 ID=CX296287; Name=CX296287; organism=Citrus clementina; type=EST; length=484bp
GAGGGATGAATCTCATAATTTGATTATGAAGAAAAAATGCATTAATAGTA
CATTAACAAATAACAATGTTTCTCCACAAACGAGCTCTTCTTCCATCTCT
ATTTCTCTTCCTAGCATATCTCATACAGGCAACTTCTCTGTAATTCTTTC
ATCGACTATGACTCAATTAGACCACATATATCTTTCTATTATGGCAAAGA
TAATACAAATTTATTTATAAAAAAAAAGGCCAAGACCAAGAGAGAAAAAA
GACAGAATCTGACAGGCAGACGAAAGAACAAGTAAATTATTGAGTTCAAA
CAAAGAATGAAACTGCATACTTAAATTCTACTCTTGGGGTTTCTCATACT
TGAGGGGCTTCACCACCTCCCATGTGAAGTCAGGATCCTCCCTTCCAAAA
TGCCCATATGCAGCAGTCTTCAAAAACCTGCTATTTCCTCCCCTCTTGAG
ATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
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