CX296295

Overview
NameCX296295
Unique NameCX296295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:295..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.544e-54
Identity = 91/126 (72.22%), Postives = 108/126 (85.71%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            G TAKDA+GNDII +++L  H  G+RTL +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HAN+ + K+VF  W ETDFRTGE PWW
Sbjct:   53 GVTAKDALGNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWW 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 93/128 (72.66%), Postives = 109/128 (85.16%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 628
            G  AKDA+GNDII +D+L TH  GDR+L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+  G+VVRGPAPLSLAL HA + E+ K+ F  WTETDFRT EAPWWA
Sbjct:   53 GVIAKDALGNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA 180          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.445e-52
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V  PWTETDFRTGE PWW+
Sbjct:   53 GTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTETDFRTGEEPWWS 179          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.888e-52
Identity = 89/127 (70.08%), Postives = 107/127 (84.25%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 628
            G  AKDA+GND+  + WL TH PGDR+L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH ++ E+G V F PWTETDFRT  APWW
Sbjct:  112 GQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.466e-52
Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            G  AKDA+GNDI  +D+L  H   DR L +GLKGDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA + + K+ F PWTETDFRTG+ PWW
Sbjct:   53 GVVAKDALGNDISVSDFLAKHPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.224e-51
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V   WTETDFRTGE PWW+
Sbjct:   53 GTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WT+TDFRTGE PWWA
Sbjct:   52 GTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 87/126 (69.05%), Postives = 101/126 (80.16%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            GT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   52 GTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 87/126 (69.05%), Postives = 101/126 (80.16%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            GT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   52 GTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 89/128 (69.53%), Postives = 108/128 (84.38%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 628
            G TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K+V   WTETDFRT E PWWA
Sbjct:   53 GVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
The following BLAST results are available for this feature:
BLAST of CX296295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_TRIEI1.544e-5472.22Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRI_SYNP27.665e-5472.66Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_ANAVT1.445e-5270.08Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRIA_CYAPA1.888e-5270.08Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRI_CYAP42.466e-5269.84Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRIA_ANASP1.224e-5169.29Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_SYNPW2.087e-5168.50Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMM2.087e-5169.05Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM32.087e-5169.05Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIB_SYNY32.087e-5169.53Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05138E04SK FerrChloL1 Citrus clementina cDNA clone C05138E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296295 ID=CX296295; Name=CX296295; organism=Citrus clementina; type=EST; length=684bp
ACGTTGAAGCTGTAGCATTACATTGTTCAGCGTATGAATTTTTGAGATAC
AAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGA
TAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGAT
AAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAAAGCAAACCGA
CCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAACAAGTTTAAGC
CCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGA
AGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGCCAATGACAAT
GGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATTGGGATCCGTG
GCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGCACCACACATC
CAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAGTGTTTTGTCT
TTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGT
TCGGTCCCCAGGGCCGTGCGTGTTAAGCCAATCAGCGGCAATGATGTCAT
TGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACTTCCTAAACAGG
TGGGGCAAAGAGGTCGCATAAGGAACCACATAAT
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