CX296295

Overview
NameCX296295
Unique NameCX296295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:295..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIA_CHLRE (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 91/128 (71.09%), Postives = 105/128 (82.03%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 628
            G  AKDA+GNDI A +WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  WTETDFRTG  PWWA
Sbjct:   79 GQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVTFSTWTETDFRTGLEPWWA 206          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.560e-51
Identity = 87/127 (68.50%), Postives = 102/127 (80.31%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG+APWWA
Sbjct:   53 GTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 86/127 (67.72%), Postives = 105/127 (82.68%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   52 GTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 87/127 (68.50%), Postives = 103/127 (81.10%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            G  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:   53 GVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 87/127 (68.50%), Postives = 103/127 (81.10%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            G  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:   53 GVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GTTAKD +GND+    +L     GDR L +GLKGDPTY+VV+  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAH N+ + K+V  PWTETDFRTG+APWW+
Sbjct:   53 GTTAKDELGNDVSVTKFLENRNAGDRNLVQGLKGDPTYIVVDSKEAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHTNVSDDKIVLTPWTETDFRTGDAPWWS 179          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 7.932e-51
Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            GTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA +++  +V  PWTETDFRTGE PWW
Sbjct:   53 GTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.353e-50
Identity = 87/127 (68.50%), Postives = 102/127 (80.31%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GTTAKD +GN I A  WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   52 GTTAKDELGNAITATGWLSSHPEGDRSLVQGLKGDPTYLIVEGPDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.767e-50
Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            GT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   52 GTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.767e-50
Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            GT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   52 GTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
The following BLAST results are available for this feature:
BLAST of CX296295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_CHLRE2.087e-5171.09Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_NOSSP3.560e-5168.50Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_SYNSC4.650e-5167.72Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNP64.650e-5168.50Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE74.650e-5168.50Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSP74.650e-5166.93Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_MASLA7.932e-5166.67Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRI_SYNPX1.353e-5068.50Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT1.767e-5066.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM11.767e-5066.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionC05138E04SK FerrChloL1 Citrus clementina cDNA clone C05138E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296295 ID=CX296295; Name=CX296295; organism=Citrus clementina; type=EST; length=684bp
ACGTTGAAGCTGTAGCATTACATTGTTCAGCGTATGAATTTTTGAGATAC
AAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGA
TAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGAT
AAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAAAGCAAACCGA
CCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAACAAGTTTAAGC
CCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGA
AGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGCCAATGACAAT
GGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATTGGGATCCGTG
GCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGCACCACACATC
CAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAGTGTTTTGTCT
TTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGT
TCGGTCCCCAGGGCCGTGCGTGTTAAGCCAATCAGCGGCAATGATGTCAT
TGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACTTCCTAAACAGG
TGGGGCAAAGAGGTCGCATAAGGAACCACATAAT
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