CX296295

Overview
NameCX296295
Unique NameCX296295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 81/127 (63.78%), Postives = 99/127 (77.95%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   52 GTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   52 GTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.400e-47
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   52 GTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   52 GTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 78/127 (61.42%), Postives = 98/127 (77.17%), Query Frame = -3
Query:  248 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            GT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   52 GTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.449e-44
Identity = 79/125 (63.20%), Postives = 92/125 (73.60%), Query Frame = -3
Query:  248 AKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 619
            A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK++  PWTETDFRTGE PWWA
Sbjct:  128 ALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  272 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 628
            G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   53 GVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = -3
Query:  272 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 628
            G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   53 GLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 64/126 (50.79%), Postives = 80/126 (63.49%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            G  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + ++   PWT+ D RTGE PWW
Sbjct:   53 GIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 66/134 (49.25%), Postives = 82/134 (61.19%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR-----TGEAPWW 628
            G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A + + KV+  PWTE DFR       + P+W
Sbjct:   51 GVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184          
The following BLAST results are available for this feature:
BLAST of CX296295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM91.072e-4763.78Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM21.072e-4764.57Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM01.400e-4764.57Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP5.320e-4761.42Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM56.948e-4761.42Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA1.449e-4463.20Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJA6.101e-3556.30Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJB1.775e-3456.30Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY39.741e-3350.79Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRI_GLOVI5.345e-3149.25Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138E04SK FerrChloL1 Citrus clementina cDNA clone C05138E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296295 ID=CX296295; Name=CX296295; organism=Citrus clementina; type=EST; length=684bp
ACGTTGAAGCTGTAGCATTACATTGTTCAGCGTATGAATTTTTGAGATAC
AAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGA
TAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGAT
AAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAAAGCAAACCGA
CCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAACAAGTTTAAGC
CCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGA
AGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGCCAATGACAAT
GGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATTGGGATCCGTG
GCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGCACCACACATC
CAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAGTGTTTTGTCT
TTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGT
TCGGTCCCCAGGGCCGTGCGTGTTAAGCCAATCAGCGGCAATGATGTCAT
TGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACTTCCTAAACAGG
TGGGGCAAAGAGGTCGCATAAGGAACCACATAAT
back to top