CX296295

Overview
NameCX296295
Unique NameCX296295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:295..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = -3
Query:  251 AKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 619
            AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:   56 AKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 63/126 (50.00%), Postives = 75/126 (59.52%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            G  AKD IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L H  +++  +    W ETD RTGE PWW
Sbjct:   53 GVLAKDKIGHPIPASQIL-VQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 62/126 (49.21%), Postives = 75/126 (59.52%), Query Frame = -3
Query:  251 GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            G  A+D IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L    +++  +   PW ETD RTGE PWW
Sbjct:   53 GILAQDKIGHPIPASQIL-AQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPWW 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  302 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVV 526
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y   G+++ GP PL L      IE+GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of CX296295 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = -3
Query:  302 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVV 514
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y   G ++ GP PL L    A IE   ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of CX296295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIC_ANASP2.031e-3049.59Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIB_ANAVT1.719e-2950.00Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP6.534e-2949.21Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE8.573e-1341.33Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT1.910e-1243.66Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionC05138E04SK FerrChloL1 Citrus clementina cDNA clone C05138E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296295 ID=CX296295; Name=CX296295; organism=Citrus clementina; type=EST; length=684bp
ACGTTGAAGCTGTAGCATTACATTGTTCAGCGTATGAATTTTTGAGATAC
AAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGA
TAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGAT
AAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAAAGCAAACCGA
CCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAACAAGTTTAAGC
CCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGA
AGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGCCAATGACAAT
GGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATTGGGATCCGTG
GCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGCACCACACATC
CAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAGTGTTTTGTCT
TTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGT
TCGGTCCCCAGGGCCGTGCGTGTTAAGCCAATCAGCGGCAATGATGTCAT
TGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACTTCCTAAACAGG
TGGGGCAAAGAGGTCGCATAAGGAACCACATAAT
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