CX296299

Overview
NameCX296299
Unique NameCX296299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 119/185 (64.32%), Postives = 140/185 (75.68%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+S   I   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL EA++IAILNANYMAKRLEKHY +LFRG  G VAHEFI+D R  K +A +E  DVAKRL DYGFH PTMSWPV GTLMIEPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH  + +    W +PY
Sbjct:  788 HPVIS---IKPTEGTWPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKEATEIAILNANYMAKRLEKHYRVLFRGARGYVAHEFILDTRPFKKSANVEAVDVAKRLQDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPHSLTCVTSSCWDRPY 969          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.224e-63
Identity = 120/185 (64.86%), Postives = 139/185 (75.14%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+    I   + + PLGT++AAPWGS+ ILPIS+ YI  MG+KGL  AS+IAILNANYMAKRLEKHY ILFRGV G VAHEFI+D R  K TA IE  D+AKRL DYGFH PTMSWPV GTLMIEPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH  + +    W +PY
Sbjct:  767 HPVIK---IQTDKDACPLGTVSAAPWGSSAILPISWVYIKTMGAKGLKHASEIAILNANYMAKRLEKHYKILFRGVRGYVAHEFILDTRPFKKTANIEAVDLAKRLQDYGFHAPTMSWPVAGTLMIEPTESEDKGELDRFCDAMISIRQEIADIEEGRMDPQVNPLKMSPHTLNCVTSSKWDRPY 948          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.594e-61
Identity = 111/167 (66.47%), Postives = 134/167 (80.24%), Query Frame = 3
Query:   78 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            G + AAPWGSA ILPIS+ YI +MG  GLT A+ IAILNANY+AKRLE +YP+L++G +G VAHE I+DLR LK +AGIE ED+AKRLMDYGFH PT+SWPVPGTLMIEPTESE+K ELDR+C+A+I+IR EIA+IE G +D   N LK APHP  +L  + W  PY
Sbjct:  745 GPVTAAPWGSASILPISWMYITLMGGVGLTRATAIAILNANYIAKRLEPYYPVLYKGAHGLVAHECILDLRPLKKSAGIEVEDIAKRLMDYGFHAPTVSWPVPGTLMIEPTESETKAELDRFCEAMIAIRSEIAEIEAGVSDRQQNPLKNAPHPALMLATEPWPYPY 911          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.594e-61
Identity = 113/185 (61.08%), Postives = 143/185 (77.30%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+ +G  P     Q +G +AAAPWGSA IL IS+ YI MMG+ GLT+A+K+AILNANY+AK+L  +YP+L++G NG VAHE I+DLR LK +A IE +D+AKRL+DYGFH PT+SWPV GT+M+EPTESES+ ELDR+C+ALI+IR+EIA IE GK DI +N LK APH    L+   W  PY
Sbjct:  760 HPVLESGKNP-----QNIGAVAAAPWGSASILVISWMYIVMMGADGLTQATKVAILNANYIAKKLAAYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFHAPTVSWPVAGTIMVEPTESESQAELDRFCEALIAIRQEIADIEAGKVDIQDNSLKNAPHTVESLIVGEWPHPY 939          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_HUMAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 2.719e-61
Identity = 115/185 (62.16%), Postives = 137/185 (74.05%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+S   +   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL +A++ AILNANYMAKRLE HY ILFRG  G V HEFI+D R  K +A IE  DVAKRL DYGFH PTMSWPV GTLM+EPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH  + +    W +PY
Sbjct:  783 HPVIS---LKRNEDACPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGARGYVGHEFILDTRPFKKSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPHSLTCVTSSHWDRPY 964          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_PROMM (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvP PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.006e-60
Identity = 109/185 (58.92%), Postives = 142/185 (76.76%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HP+ + GG       Q +G I+AAPWGSA ILPIS+ Y+ MMG++GL +AS +A+L+ANY+A RL  HYP+LFRG  G VAHE I+DLR LK +AG+E +D+AKRLMDYGFH PT+SWPV GT+M+EPTESES EEL+R+CDA+I+IREE A IE+G+ D  NN L+ APH  + +  + W +PY
Sbjct:  730 HPLAACGG------EQGIGAISAAPWGSAGILPISWMYLRMMGAEGLRQASAVALLSANYLAHRLHPHYPVLFRGQAGLVAHECILDLRPLKRSAGLEVDDIAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLEELNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPHTLAAVTAEVWDRPY 908          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_PROM3 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvP PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.006e-60
Identity = 109/185 (58.92%), Postives = 142/185 (76.76%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HP+ + GG       Q +G I+AAPWGSA ILPIS+ Y+ MMG++GL +AS +A+L+ANY+A RL  HYP+LFRG  G VAHE I+DLR LK +AG+E +D+AKRLMDYGFH PT+SWPV GT+M+EPTESES EEL+R+CDA+I+IREE A IE+G+ D  NN L+ APH  + +  + W +PY
Sbjct:  750 HPLAACGG------EQGIGAISAAPWGSAGILPISWMYLRMMGAEGLRQASAVALLSANYLAHRLHPHYPVLFRGQAGLVAHECILDLRPLKRSAGLEVDDIAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLEELNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPHTLAAVTAEVWDRPY 928          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.697e-60
Identity = 108/168 (64.29%), Postives = 130/168 (77.38%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +  ++A PWGS+ ILPI+Y Y+ +MG +GL +A+++AILNANYMA RL+ HY IL+ G +G VAHEFI+DLR  K +AGIE EDVAKRL D  FHGPTMSWPVP TLMIEPTESESK ELDR CDALI IREEI +IE GKAD  NNVL  +PH   +++ D W  PY
Sbjct:  783 MSAVSAGPWGSSSILPITYVYLKLMGGQGLKKATQVAILNANYMASRLKDHYKILYTGSHGLVAHEFIIDLRMFKESAGIEAEDVAKRLQDMNFHGPTMSWPVPNTLMIEPTESESKYELDRLCDALILIREEIREIETGKADRKNNVLVNSPHTEKVIVADNWNYPY 950          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.671e-59
Identity = 115/189 (60.85%), Postives = 144/189 (76.19%), Query Frame = 3
Query:   12 LSAFHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            L+ F P  S  G  A +   P   I+AAPWGSA ILPIS+TYI MMG +GLTEA+K AILNANY+AKRLE HYP+L+ G  G VAHE I+D+R  K++ G+  +D+AKRL+D+GFH PTMS+PVPGTLMIEPTESES  ELDR+CDA+I+IREEI  IENG+ D+ ++ L  APH  + L+GD W +PY
Sbjct:  731 LAPFLPGHSAMGETADKAIAP---ISAAPWGSAGILPISWTYIRMMGGEGLTEATKSAILNANYIAKRLEPHYPVLYTGSQGFVAHECIIDVRPFKDSCGVTVDDIAKRLIDFGFHAPTMSFPVPGTLMIEPTESESLAELDRFCDAMIAIREEIRAIENGEYDVDHSPLHHAPHTAADLVGD-WDRPY 915          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_PROMT (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL2A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.154e-58
Identity = 113/185 (61.08%), Postives = 137/185 (74.05%), Query Frame = 3
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            H ++  GG  A      +  ++AAP+GSA ILPIS+ YI MMGS GL +AS IAIL+ANY+AKRL+ +YP+LF+  NG VAHE I+DLR LK+  GIE EDVAKRLMDYGFH PT+SWPV GTLM+EPTESES  ELDR+CDA+I IREEI QI+ GK D  NN LK +PH    +  D W +PY
Sbjct:  741 HSIIKCGGQKA------ISAVSAAPFGSAGILPISWMYIRMMGSDGLRKASSIAILSANYLAKRLDPYYPVLFKDPNGLVAHECILDLRPLKSQLGIEVEDVAKRLMDYGFHAPTISWPVAGTLMVEPTESESLPELDRFCDAMIGIREEIEQIKLGKIDPINNPLKQSPHTLKTVTSDDWDRPY 919          
The following BLAST results are available for this feature:
BLAST of CX296299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_MOUSE9.985e-6464.32Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_CHICK2.224e-6364.86Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_THEEB1.594e-6166.47Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_ANASP1.594e-6161.08Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_HUMAN2.719e-6162.16Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PROMM3.006e-6058.92Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM33.006e-6058.92Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_DICDI6.697e-6064.29Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_HAHCH9.671e-5960.85Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_PROMT2.154e-5861.08Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionC05138E08SK FerrChloL1 Citrus clementina cDNA clone C05138E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296299 ID=CX296299; Name=CX296299; organism=Citrus clementina; type=EST; length=578bp
CACTTGGCACCCTTTCTGCCTTCCATCCTGTGGTATCCACAGGTGGTATT
CCTGCCCCTGAAAAGTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTG
GGGCTCTGCACTTATCCTGCCAATATCATATACGTACATAGCTATGATGG
GTTCTAAAGGACTCACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAAC
TACATGGCAAAACGTTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGT
CAATGGAACAGTTGCTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGA
ATACTGCCGGGATAGAGCCCGAAGATGTTGCCAAACGTCTTATGGATTAT
GGATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCACACTTATGAT
TGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATG
CTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCA
GATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCT
CATGGGAGATACATGGACTAAACCATAC
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