CX296299

Overview
NameCX296299
Unique NameCX296299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:1..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURCC (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.867e-56
Identity = 103/168 (61.31%), Postives = 133/168 (79.17%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IREEI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIREEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_VIBFM (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain MJ11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.663e-56
Identity = 102/165 (61.82%), Postives = 127/165 (76.97%), Query Frame = 3
Query:   84 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            ++AA  GSA ILPIS+ YIAMMG  GLTEA+K+AILNANY+ +RL  HYP+L+RG NG +AHE I+D+R LK   GI  ED+AKRLMD+GFH PTMS+PV GTLM+EPTESE   ELDR+CDA+I+IREE+ ++E G+  + NN L  APH    LM D+W  PY
Sbjct:  746 VSAADLGSASILPISWAYIAMMGEMGLTEATKVAILNANYVMERLRPHYPVLYRGSNGRIAHECIIDIRPLKEATGISEEDIAKRLMDFGFHAPTMSFPVAGTLMVEPTESEDLAELDRFCDAMIAIREEMHKVEQGEWPLDNNPLVNAPHTQVDLMSDSWDHPY 910          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_RHOPA (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris GN=gcvP PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.663e-56
Identity = 104/181 (57.46%), Postives = 133/181 (73.48%), Query Frame = 3
Query:   57 PEKSQPL-------GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            P + +PL       GT++AAPWGSA IL ISY YI MMG+ GL  A++IAILNANY+A +L  H+P+L+R   G VAHE I+D R LK + G+  +D+AKRL+DYGFH PTMS+PVPGTLMIEPTESESK E+DR+CDA+I+IR EIAQ+E G+  I  + L+ APH    +    WT+PY
Sbjct:  756 PAEGEPLNGGLHGGGTVSAAPWGSASILTISYIYILMMGAAGLKRATEIAILNANYIAAKLHPHFPVLYRNPRGRVAHECIIDPRALKTSTGVTVDDIAKRLIDYGFHAPTMSFPVPGTLMIEPTESESKAEIDRFCDAMIAIRREIAQVEAGRYPIEQSPLRHAPHTAHDVTSAEWTRPY 936          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BRAJA (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium japonicum GN=gcvP PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.663e-56
Identity = 103/178 (57.87%), Postives = 133/178 (74.72%), Query Frame = 3
Query:   45 GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            G PA     P+G ++AAP+GSA IL ISY YI MMG +GL  A++IAILNANY+A RL+ H+P+L++   G VAHE IVD R LK T+G+  +D+AKRL+DYGFH PTMS+PVPGTLMIEPTESESK ELDR+CDA+I+IR+EI ++E G+  I  + L+ APH    +  D W + Y
Sbjct:  730 GHPATRGDAPVGPVSAAPFGSASILTISYIYILMMGGEGLKRATEIAILNANYIAARLDAHFPVLYKNARGRVAHECIVDPRALKTTSGVTVDDIAKRLIDYGFHAPTMSFPVPGTLMIEPTESESKAELDRFCDAMIAIRKEIGEVEAGRFKIEASPLRHAPHTVHDIADDAWARAY 907          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 112/190 (58.95%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   12 LSAFHPVVSTGGIPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            L AF P  S       + + Q +G I+AAP+GSA IL IS+ YIAMMG +GLT+A+++AIL+ANYMAKRLE +YPILFRG N  VAHE I+DLR LK  A IE EDVAKRLMD+GFH PT+SWPV GT+M+EPTESES  ELDR+CDA+I+I +E   I +G+ D  +N LK APH    L+   W  PY
Sbjct:  748 LQAFLPRTSLNSTAELQAEDQSIGMISAAPYGSASILVISWMYIAMMGPQGLTKATEVAILSANYMAKRLENYYPILFRGNNELVAHECILDLRPLKKQAAIEVEDVAKRLMDFGFHAPTVSWPVLGTMMVEPTESESLGELDRFCDAMIAIYQEAQAITHGEIDPADNPLKNAPHTAQSLICGEWNHPY 937          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURTA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFVAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURS3 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia sp. (strain 383) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 133/168 (79.17%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGISVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWLHAY 931          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURPS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURP6 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 668) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURP1 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1710b) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931          
The following BLAST results are available for this feature:
BLAST of CX296299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_BURCC5.867e-5661.31Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_VIBFM7.663e-5661.82Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_RHOPA7.663e-5657.46Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_BRAJA7.663e-5657.87Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]
GCSP_SYNY31.307e-5558.95Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_BURTA1.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURS31.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURPS1.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP61.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURP11.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC05138E08SK FerrChloL1 Citrus clementina cDNA clone C05138E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296299 ID=CX296299; Name=CX296299; organism=Citrus clementina; type=EST; length=578bp
CACTTGGCACCCTTTCTGCCTTCCATCCTGTGGTATCCACAGGTGGTATT
CCTGCCCCTGAAAAGTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTG
GGGCTCTGCACTTATCCTGCCAATATCATATACGTACATAGCTATGATGG
GTTCTAAAGGACTCACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAAC
TACATGGCAAAACGTTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGT
CAATGGAACAGTTGCTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGA
ATACTGCCGGGATAGAGCCCGAAGATGTTGCCAAACGTCTTATGGATTAT
GGATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCACACTTATGAT
TGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATG
CTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCA
GATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCT
CATGGGAGATACATGGACTAAACCATAC
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