CX296299

Overview
NameCX296299
Unique NameCX296299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:1..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURP0 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia pseudomallei (strain 1106a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  759 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 926
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURMS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain SAVP1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURMA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURM9 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BURM7 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10247) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVAKRLMDYGFH PTMS+PVPGTLM+EPTESES+EELDR+  A+I+IR+EI  +E G+AD  +N L+ APH  +++  + W   Y
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAY 931
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BORPA (Glycine dehydrogenase [decarboxylating] OS=Bordetella parapertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.567e-55
Identity = 101/168 (60.12%), Postives = 132/168 (78.57%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPI Y YIA+MG++GL  A+++AILNANY+A RL  HYP+L+ G NG VAHE I+D+R LK T+GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE   EL+R+ +A+I+IR EIAQIE+G+ D  +NVL+ APH   +L+ + W   Y
Sbjct:  743 VGPVSAAPYGSAGILPIPYVYIALMGAEGLRRATEVAILNANYIAARLRDHYPVLYAGRNGRVAHECILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDY 910

HSP 2 Score: 21.557 bits (44), Expect = 1.567e-55
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:    1 HLAPFLPSIL 30
            HLAP+LP +L
Sbjct:  722 HLAPYLPGVL 731
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BORBR (Glycine dehydrogenase [decarboxylating] OS=Bordetella bronchiseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.567e-55
Identity = 101/168 (60.12%), Postives = 132/168 (78.57%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPI Y YIA+MG++GL  A+++AILNANY+A RL  HYP+L+ G NG VAHE I+D+R LK T+GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE   EL+R+ +A+I+IR EIAQIE+G+ D  +NVL+ APH   +L+ + W   Y
Sbjct:  743 VGPVSAAPYGSAGILPIPYVYIALMGAEGLRRATEVAILNANYIAARLRDHYPVLYAGRNGRVAHECILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDY 910

HSP 2 Score: 21.557 bits (44), Expect = 1.567e-55
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:    1 HLAPFLPSIL 30
            HLAP+LP +L
Sbjct:  722 HLAPYLPGVL 731
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_VIBHB (Glycine dehydrogenase [decarboxylating] OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.707e-55
Identity = 101/165 (61.21%), Postives = 128/165 (77.58%), Query Frame = 3 
Query:   84 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            ++AA  GSA ILPIS+ YIAMMG  GLT+A+K+AILNANY+ ++L  HYP+L+RG NG VAHE I+D+R LK   GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE  EELDR+CDA+I+IREE+ +++NG+  + NN L  APH    L  + W +PY
Sbjct:  745 VSAADMGSASILPISWAYIAMMGEAGLTDATKVAILNANYVMEQLRPHYPVLYRGSNGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEDLEELDRFCDAMIAIREEMTKVKNGEWPLDNNPLVNAPHTQFDLAKEEWDRPY 909
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_SYNR3 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain RCC307) GN=gcvP PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.230e-55
Identity = 103/185 (55.68%), Postives = 136/185 (73.51%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HP+V  GG       Q +G ++AAPWGSA ILPIS+ YI +MG  GL +A+ +A+L AN +A+RLE H+P+L+RG NG VAHE I+DLR LK +AG+E +D+AKRLMDYGFH PT+SWPV GT+M+EPTESES  ELDR+ +A+++IR E A IE G  D  +N L+ APH  + +  D W +PY
Sbjct:  731 HPLVPCGG------EQAIGPVSAAPWGSASILPISWMYIRLMGGAGLRQATAVALLAANDLAERLEPHFPVLYRGANGRVAHECILDLRPLKRSAGLEVDDLAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLLELDRFVEAMMAIRAEAAAIEAGLCDRDDNPLRRAPHTLAAVTADVWERPY 909
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BORPE (Glycine dehydrogenase [decarboxylating] OS=Bordetella pertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.664e-55
Identity = 100/168 (59.52%), Postives = 132/168 (78.57%), Query Frame = 3 
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA ILPI Y YIA+MG++GL  A+++AILNANY+A RL  HYP+L+ G NG VAHE I+D+R LK T+GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE   EL+R+ +A+I+IR EIAQ+E+G+ D  +NVL+ APH   +L+ + W   Y
Sbjct:  743 VGPVSAAPYGSAGILPIPYVYIALMGAEGLRRATEVAILNANYIATRLRGHYPVLYAGRNGRVAHECILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQVESGERDRDDNVLRNAPHTAQMLLAEEWHHDY 910

HSP 2 Score: 21.557 bits (44), Expect = 2.664e-55
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:    1 HLAPFLPSIL 30
            HLAP+LP +L
Sbjct:  722 HLAPYLPGVL 731
The following BLAST results are available for this feature:
BLAST of CX296299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_BURP01.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMS1.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMA1.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM91.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM71.307e-5560.71Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BORPA1.567e-5560.12Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORBR1.567e-5560.12Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_VIBHB1.707e-5561.21Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_SYNR32.230e-5555.68Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_BORPE2.664e-5559.52Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]

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Properties
Property NameValue
Genbank descriptionC05138E08SK FerrChloL1 Citrus clementina cDNA clone C05138E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296299 ID=CX296299; Name=CX296299; organism=Citrus clementina; type=EST; length=578bp
CACTTGGCACCCTTTCTGCCTTCCATCCTGTGGTATCCACAGGTGGTATT
CCTGCCCCTGAAAAGTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTG
GGGCTCTGCACTTATCCTGCCAATATCATATACGTACATAGCTATGATGG
GTTCTAAAGGACTCACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAAC
TACATGGCAAAACGTTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGT
CAATGGAACAGTTGCTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGA
ATACTGCCGGGATAGAGCCCGAAGATGTTGCCAAACGTCTTATGGATTAT
GGATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCACACTTATGAT
TGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATG
CTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCA
GATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCT
CATGGGAGATACATGGACTAAACCATAC
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