CX296299

Overview
NameCX296299
Unique NameCX296299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:1..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.559e-53
Identity = 99/173 (57.23%), Postives = 135/173 (78.03%), Query Frame = 3
Query:   60 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            + SQ +G ++A+ +GSA ILPIS+ YIAMMG+ GLT A++ AIL+ANY+AKRL  +YP+L+ G +G VAHE I+D+R L+  +GI  ED+AKRLMD+GFH PTMS+PVPGTLMIEPTESE K ELDR+ DA+I+IR E+ ++ +G+ D  +N LK APH  +++M D W+  Y
Sbjct:  761 DASQNIGNVSASAFGSASILPISWMYIAMMGAAGLTAATETAILSANYVAKRLAPYYPVLYTGAHGLVAHECILDIRPLQKESGISNEDIAKRLMDFGFHAPTMSFPVPGTLMIEPTESEPKVELDRFIDAMIAIRGEVDKVISGEFDREDNPLKHAPHTAAVVMADDWSHKY 933          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_PSEU5 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas stutzeri (strain A1501) GN=gcvP PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.559e-53
Identity = 111/192 (57.81%), Postives = 140/192 (72.92%), Query Frame = 3
Query:    3 LGTLSAFHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            L    A HPVV   G P P      G ++AAPWGSA ILPIS+ YIAMMG + L +A+++AIL ANY+A RL   +P+L+ G NG VAHE I+DLR LK  +GI  EDVAKRLMDYGFH PTMS+PVPGTLMIEPTESESK ELDR+ +A++SIR EIA++++G+    NN L  APH  + ++G+ W +PY
Sbjct:  729 LAPFVANHPVVELEG-PQPGN----GAVSAAPWGSASILPISWMYIAMMGPQ-LRDATEVAILGANYLANRLGGAFPVLYSGRNGRVAHECILDLRPLKAASGISEEDVAKRLMDYGFHAPTMSFPVPGTLMIEPTESESKAELDRFVEAMLSIRAEIAKVQDGEWPADNNPLVRAPHTLADVIGE-WDRPY 913          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP2_COLP3 (Glycine dehydrogenase [decarboxylating] 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.559e-53
Identity = 102/177 (57.63%), Postives = 131/177 (74.01%), Query Frame = 3
Query:   48 IPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +P    +  +G ++A   GSA ILPIS+ YIA+MG++GL  A+++AILNANY+ ++L  HYPILFRG  G VAHE I+DLR LK ++GI  EDVAKRLMD+GFH PTMS+PV GTLMIEPTESES EELD++ DALI+IR EIA++E G   + +N L  APH  + L G  W + Y
Sbjct:  732 LPGHSVTNTVGAVSATALGSASILPISWAYIALMGAEGLKSATELAILNANYIMEKLSPHYPILFRGKQGRVAHECIIDLRPLKESSGISEEDVAKRLMDFGFHAPTMSFPVAGTLMIEPTESESLEELDKFIDALITIRHEIAKVEEGTWTLADNPLVNAPHTLNDLTGSDWPRAY 908          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_AGRT5 (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gcvP PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.649e-53
Identity = 98/167 (58.68%), Postives = 130/167 (77.84%), Query Frame = 3
Query:   78 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            G ++AAP+GS  ILPIS++Y  MMG +GLT+A+K+AILNANY+A+RL+  Y +L++   G VAHE I+D R L ++ G+  +DVAKRL+D GFH PTMSWPV GTLMIEPTESE+K E+DR+CDA+++IREE   IE G+AD +NN LK APH    L+G+ W +PY
Sbjct:  741 GAVSAAPFGSPSILPISWSYCLMMGGEGLTQATKVAILNANYIAERLKGAYDVLYKSETGRVAHECIIDTRPLADSCGVTVDDVAKRLIDCGFHAPTMSWPVAGTLMIEPTESETKAEIDRFCDAMLAIREEARDIEEGRADKNNNPLKNAPHTVEDLVGE-WDRPY 906          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_PSYIN (Glycine dehydrogenase [decarboxylating] OS=Psychromonas ingrahamii (strain 37) GN=gcvP PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 7.930e-53
Identity = 103/165 (62.42%), Postives = 124/165 (75.15%), Query Frame = 3
Query:   84 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            ++AA  GSA ILPISY YIAMMG +GLT A++IAILNANY+ +RL  HYPIL++G  G VAHE I+D+R L+  +GI  ED+AKRLMDYGFH PTMS+PV GT MIEPTESES  ELDR+CDA+I+IR EI QIE+G+    +N L  APH    LM   WT  Y
Sbjct:  756 VSAAELGSASILPISYAYIAMMGEQGLTSATQIAILNANYIMERLRPHYPILYQGKEGRVAHECIIDIRPLEAASGISNEDIAKRLMDYGFHAPTMSFPVGGTFMIEPTESESTAELDRFCDAMIAIRHEIKQIEDGEWSATDNPLVNAPHTQVDLMESEWTHGY 920          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_BORA1 (Glycine dehydrogenase [decarboxylating] OS=Bordetella avium (strain 197N) GN=gcvP PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 9.092e-53
Identity = 95/168 (56.55%), Postives = 130/168 (77.38%), Query Frame = 3
Query:   75 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            +G ++AAP+GSA IL I + YI++MG++GL  A+++AILNANY+A RL ++YP+L+ G +G VAHE I+D+R LK + GI  ED+AKRLMDYGFH PTMS+PV GTLM+EPTESE   EL+R+ DA+I+IR E+AQ+E G+ D  +NVLK APH   +L+ + W   Y
Sbjct:  744 VGPVSAAPYGSAGILAIPFVYISLMGAEGLRRATEVAILNANYVATRLREYYPVLYAGRHGRVAHECILDIRPLKESIGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIDAMIAIRAEVAQVERGERDREDNVLKNAPHTAQMLLAEEWHHAY 911          

HSP 2 Score: 21.557 bits (44), Expect = 9.092e-53
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:    1 HLAPFLPSIL 30
            HLAP+LP +L
Sbjct:  723 HLAPYLPGVL 732          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_RHIEC (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcvP PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.353e-52
Identity = 100/174 (57.47%), Postives = 132/174 (75.86%), Query Frame = 3
Query:   57 PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            PE     G ++AAP+GSA ILPIS++Y  MMG +GLT+A+K+AILNANY+A RL+  Y +L++   G VAHE I+D R L +++G+  +DVAKRL+D GFH PTMSWPV GTLMIEPTESE+K ELDR+C+A+++IREE   IE+G+ D  NN LK APH    L+G+ W +PY
Sbjct:  734 PETDGRPGAVSAAPFGSASILPISWSYCLMMGGEGLTQATKVAILNANYIATRLKGAYNVLYKSKTGRVAHECIIDTRPLVDSSGVTVDDVAKRLIDCGFHAPTMSWPVAGTLMIEPTESETKAELDRFCEAMLAIREEARAIEDGRMDKTNNPLKNAPHTVEDLVGE-WDRPY 906          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_DECAR (Glycine dehydrogenase [decarboxylating] OS=Dechloromonas aromatica (strain RCB) GN=gcvP PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.767e-52
Identity = 105/192 (54.69%), Postives = 133/192 (69.27%), Query Frame = 3
Query:    3 LGTLSAFHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            L    A H V  TG        Q  G ++AAP+GSA IL IS+ Y+AM+G  G+ +A+++AILNANY+AK+L  HYP+L+ G NG VAHE I+D+R +K   GI   D+AKRLMDYGFH PT+S+PV GT+M+EPTESESK ELDR+  A+I+IREEI QIENG     NN LK APH  + +M   W  PY
Sbjct:  729 LAPFMADHVVQPTGDANRVNAGQ--GAVSAAPFGSASILTISWMYLAMLGGAGVKKATQVAILNANYVAKQLNAHYPVLYVGKNGRVAHECILDIRPIKAATGIAEIDIAKRLMDYGFHAPTVSFPVAGTIMVEPTESESKAELDRFIGAMIAIREEIRQIENGVWTADNNPLKNAPHSQADVMDAEWKHPY 918          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_AZOSE (Glycine dehydrogenase [decarboxylating] OS=Azoarcus sp. (strain EbN1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.767e-52
Identity = 106/195 (54.36%), Postives = 134/195 (68.72%), Query Frame = 3
Query:    3 LGTLSAFHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM---GDTWTKPY 578
            L    A H V +TG    P K Q  G ++AAP+GSA ILPIS+ YIAMMG  GL  A+++AILNANY+A RL +HYP+L+ G  G VAHE I+D+R +K   GI   D+AKRLMDYGFH PTMS+PV GT+MIEPTESE   ELDR+  A+I+IR EI ++ENG     +N LK APH  +  +   G  W++PY
Sbjct:  735 LAPFMADHVVAATGDETRPNKGQ--GAVSAAPFGSASILPISWMYIAMMGDTGLKLATEVAILNANYVANRLAEHYPVLYTGSQGRVAHECILDIRPIKANTGISEVDIAKRLMDYGFHAPTMSFPVAGTIMIEPTESEDLGELDRFIAAMITIRNEIREVENGAWPTDDNPLKNAPHTQADFIAADGAQWSRPY 927          
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_XANOM (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=gcvP PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = 3
Query:    6 GTLSAFHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            G  +A H      G  +   S+  G ++AA +GSA ILPIS+ Y+ MMGS GL +A+++A+LNANY+AKRL  HY  L+ G NG VAHE I+D+R L+ T+GI  ED+AKRL+D+GFH PT+S+PV GTLM+EPTESES+ ELDR+ DA+I IREEI  IE+G+ D  +N LK APH  + +    WT  Y
Sbjct:  738 GQTAAIHGGGFNSGSGSGHSSRIGGMVSAAAYGSASILPISWMYVTMMGSAGLRKATQVALLNANYIAKRLAPHYKTLYTGRNGLVAHECILDVRPLEKTSGIGAEDIAKRLIDFGFHAPTLSFPVAGTLMVEPTESESQHELDRFIDAMIQIREEIRAIEDGRLDREDNPLKHAPHTATQVSASEWTHAY 928          
The following BLAST results are available for this feature:
BLAST of CX296299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_RALPJ3.559e-5357.23Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_PSEU53.559e-5357.81Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP2_COLP33.559e-5357.63Glycine dehydrogenase [decarboxylating] 2 OS=Colwe... [more]
GCSP_AGRT54.649e-5358.68Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP_PSYIN7.930e-5362.42Glycine dehydrogenase [decarboxylating] OS=Psychro... [more]
GCSP_BORA19.092e-5356.55Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_RHIEC1.353e-5257.47Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_DECAR1.767e-5254.69Glycine dehydrogenase [decarboxylating] OS=Dechlor... [more]
GCSP_AZOSE1.767e-5254.36Glycine dehydrogenase [decarboxylating] OS=Azoarcu... [more]
GCSP_XANOM2.307e-5253.40Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]

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Properties
Property NameValue
Genbank descriptionC05138E08SK FerrChloL1 Citrus clementina cDNA clone C05138E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296299 ID=CX296299; Name=CX296299; organism=Citrus clementina; type=EST; length=578bp
CACTTGGCACCCTTTCTGCCTTCCATCCTGTGGTATCCACAGGTGGTATT
CCTGCCCCTGAAAAGTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTG
GGGCTCTGCACTTATCCTGCCAATATCATATACGTACATAGCTATGATGG
GTTCTAAAGGACTCACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAAC
TACATGGCAAAACGTTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGT
CAATGGAACAGTTGCTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGA
ATACTGCCGGGATAGAGCCCGAAGATGTTGCCAAACGTCTTATGGATTAT
GGATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCACACTTATGAT
TGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATG
CTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCA
GATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCT
CATGGGAGATACATGGACTAAACCATAC
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