CX296300

Overview
NameCX296300
Unique NameCX296300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296300 vs. ExPASy Swiss-Prot
Match: SRC_RSVP (Tyrosine-protein kinase transforming protein Src OS=Rous sarcoma virus (strain Prague C) GN=V-SRC PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 2
Query:   29 EEFKNEVMLTAKLQHVNLIRVLGFCIDTQENMLIYEYMPKRSLDYFLFDPIRRLILDWKKRXXXXXXXXXXXXXXXEY-SRLTIIHRDLKVSNILLDEDLKPKISDFGLARIFVKDDLEANTNRIVGTQGYIPPEYVGRGVYSTKSDVYSFGVLFLQIIS-GRRLFIRYGQNENLSLVEYAYEL 574
            E F  E  +  KL+H  L+++    +  +   ++ EYM K SL  FL   + + +     R                Y  R+  +HRDL+ +NIL+ E+L  K++DFGLAR+   ++  A        + +  PE    G ++ KSDV+SFG+L  ++ + GR  +      E L  VE  Y +
Sbjct:  305 EAFLQEAQVMKKLRHEKLVQLYAV-VSEEPIYIVIEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK-WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM 481          
BLAST of CX296300 vs. ExPASy Swiss-Prot
Match: PATS1_DICDI (Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum GN=pats1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 52/179 (29.05%), Postives = 86/179 (48.04%), Query Frame = 2
Query:   14 IHQGFEEFKNEVMLTAKLQHVNLIRVLGFCIDTQENMLIYEYMPKRSLDYFLFDPIRRLILDWKKRXXXXXXXXXXXXXXXEYSRLTIIHRDLKVSNILL-----DEDLKPKISDFGLARIFVKDDLEANTNRIVGTQGYIPPEYVGR-GVYSTKSDVYSFGVLFLQIISGRRLFIRYG 532
            + + F EF+ E  + ++L+H N++++ G C+D     ++ EY+P  +L  FL  P   +   W  R                 S   IIHRDLK  NILL     +     K+ DFGL+ +         TNR V    ++ PE + +    ST++DVY+FGV+  ++++ +  F   G
Sbjct: 2293 LSKAFNEFRRECWVMSELEHPNIVQLKGLCLDPL--CIVTEYLPHGNLYSFLHKP--EMEFSWLFRLKVALDISSGMAFLHS-STPPIIHRDLKSPNILLASINENAQTIAKVVDFGLSGL-----QHTITNRGVENPLWLAPEILNKTKEASTQTDVYAFGVILWELVTRKDYFGEIG 2461          
BLAST of CX296300 vs. ExPASy Swiss-Prot
Match: NEK2_HUMAN (Serine/threonine-protein kinase Nek2 OS=Homo sapiens GN=NEK2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  272 TIIHRDLKVSNILLDEDLKPKISDFGLARIFVKDDLEANTNRIVGTQGYIPPEYVGRGVYSTKSDVYSFGVLFLQIISGRRLFIRYGQNE 541
            T++HRDLK +N+ LD     K+ DFGLARI   D   A T   VGT  Y+ PE + R  Y+ KSD++S G L  ++ +    F  + Q E
Sbjct:  136 TVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKT--FVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE 223          
BLAST of CX296300 vs. ExPASy Swiss-Prot
Match: KS6A6_MOUSE (Ribosomal protein S6 kinase alpha-6 OS=Mus musculus GN=Rps6ka6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  266 RLTIIHRDLKVSNILLDEDLKPKISDFGLARIFVKDDLEANTNRIVGTQGYIPPEYVGRGVYSTKSDVYSFGVLFLQIISGRRLFIRYGQNENLSLV 556
            RL I++RDLK  NILLDE    K++DFGL++  V  D E       GT  Y+ PE V R  +S  +D +S+GVL  ++++G   F    +NE ++++
Sbjct:  211 RLGIVYRDLKPENILLDEIGHIKLTDFGLSKESV--DQEKKAYSFCGTVEYMAPEVVNRRAHSQSADWWSYGVLMFEMLTGTLPFQGKDRNETMNMI 305          
BLAST of CX296300 vs. ExPASy Swiss-Prot
Match: BLK_HUMAN (Tyrosine-protein kinase Blk OS=Homo sapiens GN=BLK PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 2
Query:   29 EEFKNEVMLTAKLQHVNLIRVLGFCIDTQENM-LIYEYMPKRSL-DYFLFDPIRRLILDWKKRXXXXXXXXXXXXXXXEYSRLTIIHRDLKVSNILLDEDLKPKISDFGLARIFVKDDLEANTNRIVGTQGYIPPEYVGRGVYSTKSDVYSFGVLFLQIISGRRL 517
            E F  E  +   LQH  L+R+  + + T+E + ++ EYM +  L D+   D   RL L    R               E  R+  IHRDL+ +NIL+ E L  KI+DFGLARI +  +  A        + +  PE +  GV++ K+DV+SFGVL +++++  R+
Sbjct:  279 EAFLGEANVMKALQHERLVRL--YAVVTKEPIYIVTEYMARGCLLDFLKTDEGSRLSLP---RLIDMSAQIAEGMAYIE--RMNSIHRDLRAANILVSEALCCKIADFGLARI-IDSEYTAQEGAKFPIK-WTAPEAIHFGVFTIKADVWSFGVLLMEVVTYGRV 434          
The following BLAST results are available for this feature:
BLAST of CX296300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
SRC_RSVP8.094e-1128.80Tyrosine-protein kinase transforming protein Src O... [more]
PATS1_DICDI8.094e-1129.05Probable serine/threonine-protein kinase pats1 OS=... [more]
NEK2_HUMAN8.094e-1141.11Serine/threonine-protein kinase Nek2 OS=Homo sapie... [more]
KS6A6_MOUSE8.094e-1139.18Ribosomal protein S6 kinase alpha-6 OS=Mus musculu... [more]
BLK_HUMAN8.094e-1133.33Tyrosine-protein kinase Blk OS=Homo sapiens GN=BLK... [more]

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Properties
Property NameValue
Genbank descriptionC05138E09SK FerrChloL1 Citrus clementina cDNA clone C05138E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296300 ID=CX296300; Name=CX296300; organism=Citrus clementina; type=EST; length=685bp
GACGAGGCGAAGAATCCACCAAGGATTTGAGGAGTTCAAGAATGAGGTTA
TGCTTACTGCAAAGCTTCAACACGTAAATCTGATCCGAGTTTTGGGTTTT
TGCATCGACACACAAGAAAATATGCTCATCTATGAGTATATGCCAAAACG
AAGCCTAGACTATTTCCTTTTTGATCCCATCAGAAGGCTTATTTTGGATT
GGAAAAAACGTATTCATATCATTCAAGGAATTATTCAGGGGCTTCTCTAT
CTCCAAGAATATTCTAGATTAACAATTATTCATCGAGACTTAAAAGTTAG
TAATATTTTGTTGGATGAAGATTTGAAACCTAAAATATCAGATTTTGGCT
TGGCTAGAATTTTTGTGAAAGATGATCTTGAAGCAAACACGAATCGAATT
GTTGGAACACAAGGCTATATTCCTCCTGAATATGTTGGAAGAGGTGTTTA
CTCCACTAAATCTGATGTCTACAGTTTTGGGGTTTTGTTTCTACAAATTA
TAAGTGGAAGAAGACTTTTCATTCGATATGGTCAAAATGAAAATCTAAGC
CTTGTAGAGTATGCTTACGAGTTGTGGAAGGATGGGAAAGGCATGGAGTT
AATGGATGCATCACTAGATGATACGCATTCCTCATGGAAATTATTGACAT
GTCTGCAAGTAGCTTTGCTATGTGTTCAGGAGAAC
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